U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Magea9 MAGE family member A9 [ Mus musculus (house mouse) ]

Gene ID: 70696, updated on 2-Nov-2024

Summary

Official Symbol
Magea9provided by MGI
Official Full Name
MAGE family member A9provided by MGI
Primary source
MGI:MGI:1917946
See related
Ensembl:ENSMUSG00000031179 AllianceGenome:MGI:1917946
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3830417A13Rik
Summary
Predicted to enable caspase binding activity and histone deacetylase binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; endoplasmic reticulum; and nucleoplasm. Predicted to be active in nucleus. Orthologous to several human genes including MAGEA10 (MAGE family member A10). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward placenta adult (RPKM 37.7) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Magea9 in Genome Data Viewer
Location:
X A7.1; X 34.57 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (63217154..63222385)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (64173548..64178779)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene prothymosin alpha pseudogene Neighboring gene STARR-seq mESC enhancer starr_47267 Neighboring gene STARR-seq mESC enhancer starr_47268 Neighboring gene predicted gene 6760 Neighboring gene SLIT and NTRK-like family, member 4 Neighboring gene DMRT-like family C1c2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables caspase binding ISO
Inferred from Sequence Orthology
more info
 
enables histone deacetylase binding ISO
Inferred from Sequence Orthology
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
uncharacterized protein LOC70696

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027512.2NP_081788.2  uncharacterized protein LOC70696

    See identical proteins and their annotated locations for NP_081788.2

    Status: VALIDATED

    Source sequence(s)
    AK049539, AL807820
    Consensus CDS
    CCDS30166.1
    UniProtKB/TrEMBL
    Q6NV89, Q8BQJ2
    Related
    ENSMUSP00000033522.9, ENSMUST00000033522.15
    Conserved Domains (2) summary
    pfam01454
    Location:103271
    MAGE; MAGE family
    pfam12440
    Location:4495
    MAGE_N; Melanoma associated antigen family N terminal

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    63217154..63222385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251498.1XP_030107358.1  uncharacterized protein LOC70696 isoform X1

    UniProtKB/TrEMBL
    Q6NV89, Q8BQJ2
    Conserved Domains (2) summary
    pfam01454
    Location:103271
    MAGE; MAGE family
    pfam12440
    Location:4495
    MAGE_N; Melanoma associated antigen family N terminal
  2. XM_030251497.1XP_030107357.1  uncharacterized protein LOC70696 isoform X1

    UniProtKB/TrEMBL
    Q6NV89, Q8BQJ2
    Conserved Domains (2) summary
    pfam01454
    Location:103271
    MAGE; MAGE family
    pfam12440
    Location:4495
    MAGE_N; Melanoma associated antigen family N terminal