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SIX4 SIX homeobox 4 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 703798, updated on 17-Aug-2024
Official Symbol
SIX4provided by VGNC
Official Full Name
SIX homeobox 4provided by VGNC
Primary source
VGNC:VGNC:99240
See related
Ensembl:ENSMMUG00000001640
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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See SIX4 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (122805015..122817736, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (122688602..122701638, complement)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene SIX homeobox 1 Neighboring gene MNAT1 component of CDK activating kinase Neighboring gene U6 spliceosomal RNA Neighboring gene tRNA methyltransferase 5

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
homeobox protein SIX4

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    122805015..122817736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028851594.1 → XP_028707427.1  homeobox protein SIX4 isoform X2

    UniProtKB/TrEMBL
    F7GRZ1, G7MY80
    Related
    ENSMMUP00000002189.4, ENSMMUT00000002318.4
    Conserved Domains (2) summary
    cd00086
    Location:219 → 273
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:99 → 208
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain

  2. XM_015143828.2 → XP_014999314.2  homeobox protein SIX4 isoform X1

    UniProtKB/TrEMBL
    G7MY80
    Conserved Domains (2) summary
    cd00086
    Location:227 → 281
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:107 → 216
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain
Nucleotide Protein
Heading Accession and Version

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