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LMX1B LIM homeobox transcription factor 1 beta [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 701912, updated on 17-Aug-2024
Official Symbol
LMX1Bprovided by VGNC
Official Full Name
LIM homeobox transcription factor 1 betaprovided by VGNC
Primary source
VGNC:VGNC:74437
See related
Ensembl:ENSMMUG00000002236
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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See LMX1B in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (13929361..14016141, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (12246282..12334504, complement)

Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672624 Neighboring gene zinc finger and BTB domain containing 43 Neighboring gene small nucleolar RNA SNORD116 Neighboring gene multivesicular body subunit 12B Neighboring gene PBX homeobox 3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
LIM homeobox transcription factor 1-beta

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041768.1 Reference Mmul_10 Primary Assembly

    Range
    13929361..14016141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001097412.4 → XP_001097412.2  LIM homeobox transcription factor 1-beta isoform X2

    UniProtKB/TrEMBL
    F6VZX1, G7NEQ2, I2CX08
    Related
    ENSMMUP00000002989.4, ENSMMUT00000003167.4
    Conserved Domains (3) summary
    cd09371
    Location:56 → 108
    LIM1_Lmx1b; The first LIM domain of Lmx1b
    cd09378
    Location:115 → 169
    LIM2_Lmx1a_Lmx1b; The second LIM domain of Lmx1a and Lmx1b
    pfam00046
    Location:222 → 276
    Homeobox; Homeobox domain

  2. XM_028834832.1 → XP_028690665.1  LIM homeobox transcription factor 1-beta isoform X1

    UniProtKB/TrEMBL
    G7NEQ2
    Conserved Domains (3) summary
    cd09371
    Location:56 → 108
    LIM1_Lmx1b; The first LIM domain of Lmx1b
    cd09378
    Location:115 → 169
    LIM2_Lmx1a_Lmx1b; The second LIM domain of Lmx1a and Lmx1b
    pfam00046
    Location:222 → 276
    Homeobox; Homeobox domain

RNA

  1. XR_003723137.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials