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Fam162a family with sequence similarity 162, member A [ Mus musculus (house mouse) ]

Gene ID: 70186, updated on 23-Jul-2018

Summary

Official Symbol
Fam162aprovided by MGI
Official Full Name
family with sequence similarity 162, member Aprovided by MGI
Primary source
MGI:MGI:1917436
See related
Ensembl:ENSMUSG00000003955
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
HGTD-P; 2310056P07Rik
Expression
Ubiquitous expression in bladder adult (RPKM 58.3), limb E14.5 (RPKM 45.7) and 26 other tissues See more
Orthologs

Genomic context

See Fam162a in Genome Data Viewer
Location:
16; 16 B3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (36043844..36071515, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (36043930..36071601, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene karyopherin (importin) alpha 1 Neighboring gene WD repeat domain 5B Neighboring gene coiled-coil domain containing 58 Neighboring gene predicted gene, 41450

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
activation of cysteine-type endopeptidase activity involved in apoptotic process ISO
Inferred from Sequence Orthology
more info
 
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
cellular response to hypoxia IDA
Inferred from Direct Assay
more info
PubMed 
cellular response to hypoxia ISO
Inferred from Sequence Orthology
more info
 
neuron apoptotic process IDA
Inferred from Direct Assay
more info
PubMed 
neuron apoptotic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of apoptotic process IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of release of cytochrome c from mitochondria IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of release of cytochrome c from mitochondria ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytosol ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrion HDA PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein FAM162A
Names
E2-induced gene 5 protein homolog
growth and transformation-dependent protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027342.1NP_081618.1  protein FAM162A

    See identical proteins and their annotated locations for NP_081618.1

    Status: PROVISIONAL

    Source sequence(s)
    AK009946
    Consensus CDS
    CCDS28146.1
    UniProtKB/Swiss-Prot
    Q9D6U8
    Related
    ENSMUSP00000004057.7, ENSMUST00000004057.8
    Conserved Domains (1) summary
    pfam06388
    Location:28153
    DUF1075; Protein of unknown function (DUF1075)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

    Range
    36043844..36071515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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