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Nt5dc2 5'-nucleotidase domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 70021, updated on 12-Sep-2019

Summary

Official Symbol
Nt5dc2provided by MGI
Official Full Name
5'-nucleotidase domain containing 2provided by MGI
Primary source
MGI:MGI:1917271
See related
Ensembl:ENSMUSG00000071547
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2510015F01Rik
Expression
Broad expression in CNS E11.5 (RPKM 90.6), limb E14.5 (RPKM 86.6) and 20 other tissues See more
Orthologs

Genomic context

See Nt5dc2 in Genome Data Viewer
Location:
14; 14 B
Exon count:
14
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (31130806..31139124)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (31948039..31952310)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene polybromo 1 Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene small integral membrane protein 4 Neighboring gene stabilin 1 Neighboring gene uncharacterized LOC115488370 Neighboring gene nischarin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
5'-nucleotidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
5'-nucleotidase domain-containing protein 2
NP_081565.1
XP_006519570.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374087.1NP_001361016.1  5'-nucleotidase domain-containing protein 2 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC154446
  2. NM_027289.2NP_081565.1  5'-nucleotidase domain-containing protein 2 isoform 2

    See identical proteins and their annotated locations for NP_081565.1

    Status: VALIDATED

    Source sequence(s)
    AC154446
    Consensus CDS
    CCDS36852.1
    UniProtKB/TrEMBL
    Q91X76
    Related
    ENSMUSP00000087680.4, ENSMUST00000090212.4
    Conserved Domains (1) summary
    pfam05761
    Location:1366
    5_nucleotid; 5' nucleotidase family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p6 C57BL/6J

    Range
    31130806..31139124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006519507.2XP_006519570.1  5'-nucleotidase domain-containing protein 2 isoform X1

    Related
    ENSMUSP00000154475.1, ENSMUST00000227096.1
    Conserved Domains (1) summary
    pfam05761
    Location:97529
    5_nucleotid; 5' nucleotidase family
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