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2810021J22Rik RIKEN cDNA 2810021J22 gene [ Mus musculus (house mouse) ]

Gene ID: 69944, updated on 8-Dec-2022

Summary

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Official Symbol
2810021J22Rikprovided by MGI
Official Full Name
RIKEN cDNA 2810021J22 geneprovided by MGI
Primary source
MGI:MGI:1917194
See related
Ensembl:ENSMUSG00000020491 AllianceGenome:MGI:1917194
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in early conceptus; inner cell mass; and oocyte. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 4.1), CNS E11.5 (RPKM 2.3) and 26 other tissues See more
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Genomic context

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See 2810021J22Rik in Genome Data Viewer
Location:
11; 11 B1.3
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (58751310..58775164)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (58860484..58884529)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 5 subfamily AF member 1 Neighboring gene olfactory receptor family 9 subfamily E member 1 Neighboring gene predicted gene 12258 Neighboring gene zinc finger protein 39 Neighboring gene predicted gene 12257

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Guo G, et al. Dev Cell, 2010 Apr 20. PMID 20412781
  4. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  5. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC69944

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172403.2 → NP_765991.1  uncharacterized protein LOC69944

    See identical proteins and their annotated locations for NP_765991.1

    Status: PREDICTED

    Source sequence(s)
    BC058081
    Consensus CDS
    CCDS24751.1
    UniProtKB/TrEMBL
    Q8BIB6
    Related
    ENSMUSP00000073579.4, ENSMUST00000073924.10
    Conserved Domains (4) summary
    smart00349
    Location:8 → 67
    KRAB; krueppel associated box
    COG5048
    Location:396 → 539
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:456 → 476
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:370 → 392
    zf-C2H2; Zinc finger, C2H2 type

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    58751310..58775164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030246292.1 → XP_030102152.1  uncharacterized protein LOC69944 isoform X1

    UniProtKB/TrEMBL
    Q8BIB6
    Conserved Domains (4) summary
    smart00349
    Location:8 → 67
    KRAB; krueppel associated box
    COG5048
    Location:396 → 539
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:456 → 476
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:370 → 392
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_030246294.2 → XP_030102154.1  uncharacterized protein LOC69944 isoform X2

    Conserved Domains (2) summary
    COG5048
    Location:314 → 457
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:374 → 394
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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