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PCBP4 poly(rC) binding protein 4 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 699225, updated on 17-Aug-2024

Summary

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Official Symbol
PCBP4provided by VGNC
Official Full Name
poly(rC) binding protein 4provided by VGNC
Primary source
VGNC:VGNC:84058
Locus tag
EGK_11579
See related
Ensembl:ENSMMUG00000022205
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PCBP4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (108086702..108096807, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (90268864..90278933)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene poly(ADP-ribose) polymerase family member 3 Neighboring gene uncharacterized LOC114676357 Neighboring gene G protein-coupled receptor 62 Neighboring gene uncharacterized LOC114676358 Neighboring gene abhydrolase domain containing 14B Neighboring gene aminoacylase-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(rC)-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001260867.1 → NP_001247796.1  poly(rC)-binding protein 4

    See identical proteins and their annotated locations for NP_001247796.1

    Status: PROVISIONAL

    Source sequence(s)
    JV045086
    UniProtKB/TrEMBL
    A0A5F7ZR06, A0A8J8Y9Z3, F6ZF58, F6ZFV1, G7ML43
    Related
    ENSMMUP00000072531.1, ENSMMUT00000098713.1
    Conserved Domains (3) summary
    cd22517
    Location:17 → 86
    KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22520
    Location:101 → 172
    KH-I_PCBP4_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22523
    Location:241 → 308
    KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    108086702..108096807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015130556.2 → XP_014986042.1  poly(rC)-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZR06, A0A8J8Y9Z3, F6ZF58, F6ZFV1, G7ML43
    Conserved Domains (3) summary
    cd22517
    Location:17 → 86
    KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22520
    Location:101 → 172
    KH-I_PCBP4_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22523
    Location:241 → 308
    KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins

  2. XM_015130550.2 → XP_014986036.1  poly(rC)-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZR06, A0A8J8Y9Z3, F6ZF58, F6ZFV1, G7ML43
    Related
    ENSMMUP00000077566.1, ENSMMUT00000092557.1
    Conserved Domains (3) summary
    cd22517
    Location:17 → 86
    KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22520
    Location:101 → 172
    KH-I_PCBP4_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22523
    Location:241 → 308
    KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins

  3. XM_015130551.2 → XP_014986037.1  poly(rC)-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZR06, A0A8J8Y9Z3, F6ZF58, F6ZFV1, G7ML43
    Conserved Domains (3) summary
    cd22517
    Location:17 → 86
    KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22520
    Location:101 → 172
    KH-I_PCBP4_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22523
    Location:241 → 308
    KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins

  4. XM_028843155.1 → XP_028698988.1  poly(rC)-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZR06, F6Z9M6
    Related
    ENSMMUP00000029237.4, ENSMMUT00000031240.4
    Conserved Domains (3) summary
    cd22517
    Location:56 → 125
    KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22520
    Location:140 → 211
    KH-I_PCBP4_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22523
    Location:280 → 347
    KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins

  5. XM_015130553.2 → XP_014986039.1  poly(rC)-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZR06, A0A8J8Y9Z3, F6ZF58, F6ZFV1, G7ML43
    Conserved Domains (3) summary
    cd22517
    Location:17 → 86
    KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22520
    Location:101 → 172
    KH-I_PCBP4_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22523
    Location:241 → 308
    KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins

  6. XM_015130555.2 → XP_014986041.1  poly(rC)-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZR06, A0A8J8Y9Z3, F6ZF58, F6ZFV1, G7ML43
    Conserved Domains (3) summary
    cd22517
    Location:17 → 86
    KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22520
    Location:101 → 172
    KH-I_PCBP4_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22523
    Location:241 → 308
    KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins

  7. XM_015130552.2 → XP_014986038.1  poly(rC)-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZR06, A0A8J8Y9Z3, F6ZF58, F6ZFV1, G7ML43
    Conserved Domains (3) summary
    cd22517
    Location:17 → 86
    KH-I_PCBP4_rpt1; first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22520
    Location:101 → 172
    KH-I_PCBP4_rpt2; second type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
    cd22523
    Location:241 → 308
    KH-I_PCBP4_rpt3; third type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 4 (PCBP4) and similar proteins
Nucleotide Protein
Heading Accession and Version

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