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VSAL_I2032 pyridoxal-dependent decarboxylase [ Aliivibrio salmonicida LFI1238 ]

Gene ID: 6988652, discontinued on 4-Mar-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:
Gene symbol
VSAL_I2032
Gene description
pyridoxal-dependent decarboxylase
Locus tag
VSAL_I2032
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aliivibrio salmonicida LFI1238 (strain: LFI1238, old-name: Aliivibrio salmonicida)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio
Location:
chromosome: 1
Sequence:
Chromosome: 1; NC_011312.1 (2178698..2180341, complement)

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Miscellaneous features

  • Loc: c2180140-2179013 HMMPfam hit to PF00282, Pyridoxal-dependent decarboxylase con, score 3.6e-21
  • Loc: c2180161-2178935 HMMPfam hit to PF01212, Beta-eliminating lyase, score 0.0017
Names
pyridoxal-dependent decarboxylase
YP_002263411.1
  • Similar to Haemophilus influenzae L-2,4-diaminobutyrate decarboxylase ddc UniProt:P71362 (511 aa) fasta scores: E()=5e-24, 26.609% id in 466 aa

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011312.1 Reference assembly

    Range
    2178698..2180341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002263411.1 pyridoxal-dependent decarboxylase [Aliivibrio salmonicida LFI1238]

    Status: PROVISIONAL

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