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Krtcap3 keratinocyte associated protein 3 [ Mus musculus (house mouse) ]

Gene ID: 69815, updated on 26-Sep-2022

Summary

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Official Symbol
Krtcap3provided by MGI
Official Full Name
keratinocyte associated protein 3provided by MGI
Primary source
MGI:MGI:1917065
See related
Ensembl:ENSMUSG00000029149 AllianceGenome:MGI:1917065
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kcp3; 2010001C09Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human KRTCAP3 (keratinocyte associated protein 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in colon adult (RPKM 123.5), duodenum adult (RPKM 73.7) and 15 other tissues See more
Orthologs
human all
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Genomic context

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See Krtcap3 in Genome Data Viewer
Location:
5; 5 B1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (31409050..31410541)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (31251670..31253202)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform Neighboring gene nuclear receptor binding protein 1 Neighboring gene intraflagellar transport 172 Neighboring gene fibronectin type III domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC129450, MGC129451

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
keratinocyte-associated protein 3
Names
KCP-3
keratinocytes associated protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001363337.1 → NP_001350266.1  keratinocyte-associated protein 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC114619
    Consensus CDS
    CCDS51459.1
    UniProtKB/Swiss-Prot
    Q9D8I7
    UniProtKB/TrEMBL
    A0A8C6H9X8
    Related
    ENSMUSP00000144464.2, ENSMUST00000201937.4
    Conserved Domains (1) summary
    pfam12304
    Location:19 → 206
    BCLP; Beta-casein like protein

  2. NM_027221.3 → NP_081497.2  keratinocyte-associated protein 3

    See identical proteins and their annotated locations for NP_081497.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    BC107024, BQ033219, CK129285
    Consensus CDS
    CCDS51459.1
    UniProtKB/Swiss-Prot
    Q8K177, Q9D8I7
    UniProtKB/TrEMBL
    A0A8C6H9X8
    Related
    ENSMUSP00000060414.8, ENSMUST00000054829.13
    Conserved Domains (1) summary
    pfam12304
    Location:19 → 206
    BCLP; Beta-casein like protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    31409050..31410541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8K177.2 GenPept UniProtKB/Swiss-Prot:Q8K177

Gene LinkOut

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