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Zswim7 zinc finger SWIM-type containing 7 [ Mus musculus (house mouse) ]

Gene ID: 69747, updated on 26-Sep-2022

Summary

Official Symbol
Zswim7provided by MGI
Official Full Name
zinc finger SWIM-type containing 7provided by MGI
Primary source
MGI:MGI:1916997
See related
Ensembl:ENSMUSG00000014243 AllianceGenome:MGI:1916997
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SWS1; 2410012H22Rik
Summary
Predicted to enable zinc ion binding activity. Predicted to be involved in double-strand break repair via homologous recombination and protein stabilization. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of Shu complex. Orthologous to human ZSWIM7 (zinc finger SWIM-type containing 7). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 30.3), kidney adult (RPKM 11.1) and 27 other tissues See more
Orthologs
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Genomic context

See Zswim7 in Genome Data Viewer
Location:
11; 11 B2
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (62158050..62172221, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (62267224..62281395, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene sperm antigen with calponin homology and coiled-coil domains 1 Neighboring gene predicted gene, 39985 Neighboring gene adenosine A2b receptor Neighboring gene tetratricopeptide repeat domain 19 Neighboring gene anaphase-promoting complex subunit 15 pseudogene Neighboring gene nuclear receptor co-repressor 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1)  1 citation

General gene information

Markers

Homology

Clone Names

  • MGC130274

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA recombination IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in double-strand break repair via homologous recombination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in double-strand break repair via homologous recombination ISO
Inferred from Sequence Orthology
more info
 
involved_in protein stabilization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of Shu complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of Shu complex ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger SWIM domain-containing protein 7
Names
SWIM domain-containing and Srs2-interacting protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027198.1NP_081474.1  zinc finger SWIM domain-containing protein 7

    See identical proteins and their annotated locations for NP_081474.1

    Status: VALIDATED

    Source sequence(s)
    AA027411, AK010472, BQ554850
    Consensus CDS
    CCDS48816.1
    UniProtKB/Swiss-Prot
    Q9CWQ2
    UniProtKB/TrEMBL
    A0A6P5QP98
    Related
    ENSMUSP00000072688.5, ENSMUST00000072916.5

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    62158050..62172221 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)