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POLR1A RNA polymerase I subunit A [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 696963, updated on 17-Aug-2024

Summary

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Official Symbol
POLR1Aprovided by VGNC
Official Full Name
RNA polymerase I subunit Aprovided by VGNC
Primary source
VGNC:VGNC:76044
See related
Ensembl:ENSMMUG00000015815
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See POLR1A in Genome Data Viewer
Location:
chromosome: 13
Exon count:
34
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (22362009..22445061)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (87788968..87868033, complement)

Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene inner membrane mitochondrial protein Neighboring gene small nucleolar RNA SNORD94 Neighboring gene pentatricopeptide repeat domain 3 Neighboring gene uncharacterized LOC114671915 Neighboring gene uncharacterized LOC106993038

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA1
Names
polymerase (RNA) I polypeptide A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041766.1 Reference Mmul_10 Primary Assembly

    Range
    22362009..22445061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015112779.2 → XP_014968265.2  DNA-directed RNA polymerase I subunit RPA1 isoform X1

    UniProtKB/TrEMBL
    F7AG21
    Related
    ENSMMUP00000020791.4, ENSMMUT00000022222.4
    Conserved Domains (2) summary
    cd01435
    Location:16 → 1004
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:958 → 1670
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5

  2. XM_015112780.2 → XP_014968266.2  DNA-directed RNA polymerase I subunit RPA1 isoform X2

    UniProtKB/TrEMBL
    F7AG21
    Conserved Domains (2) summary
    cd01435
    Location:156 → 896
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:850 → 1562
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5
Nucleotide Protein
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