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PER2 period circadian regulator 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 696476, updated on 17-Aug-2024

Summary

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Official Symbol
PER2provided by VGNC
Official Full Name
period circadian regulator 2provided by VGNC
Primary source
VGNC:VGNC:75943
See related
Ensembl:ENSMMUG00000018930
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PER2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
25
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (125647620..125693979, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (120980828..121025947, complement)

Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC706446 Neighboring gene TAR DNA-binding protein 43 pseudogene Neighboring gene hes family bHLH transcription factor 6 Neighboring gene uncharacterized LOC106992784 Neighboring gene uncharacterized LOC106992786 Neighboring gene TRAF3 interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
period circadian protein homolog 2
Names
period circadian clock 2
period homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041765.1 Reference Mmul_10 Primary Assembly

    Range
    125647620..125693979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015111477.2 → XP_014966963.2  period circadian protein homolog 2 isoform X2

    UniProtKB/TrEMBL
    F6YLH3, F6YLJ6, I0FW41
    Related
    ENSMMUP00000024910.4, ENSMMUT00000026617.4
    Conserved Domains (4) summary
    smart00091
    Location:184 → 239
    PAS; PAS domain
    PHA03247
    Location:804 → 1040
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1045 → 1227
    Period_C; Period protein 2/3C-terminal region
    pfam08447
    Location:346 → 430
    PAS_3; PAS fold

  2. XM_028831291.1 → XP_028687124.1  period circadian protein homolog 2 isoform X1

    UniProtKB/TrEMBL
    I0FW41
    Conserved Domains (4) summary
    smart00091
    Location:210 → 265
    PAS; PAS domain
    PHA03247
    Location:830 → 1066
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1071 → 1253
    Period_C; Period protein 2/3C-terminal region
    pfam08447
    Location:372 → 456
    PAS_3; PAS fold

  3. XM_015111476.2 → XP_014966962.2  period circadian protein homolog 2 isoform X2

    UniProtKB/TrEMBL
    F6YLH3, F6YLJ6, I0FW41
    Related
    ENSMMUP00000024911.4, ENSMMUT00000026618.4
    Conserved Domains (4) summary
    smart00091
    Location:184 → 239
    PAS; PAS domain
    PHA03247
    Location:804 → 1040
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1045 → 1227
    Period_C; Period protein 2/3C-terminal region
    pfam08447
    Location:346 → 430
    PAS_3; PAS fold
Nucleotide Protein
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