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Mrps9 mitochondrial ribosomal protein S9 [ Mus musculus (house mouse) ]

Gene ID: 69527, updated on 5-Feb-2023

Summary

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Official Symbol
Mrps9provided by MGI
Official Full Name
mitochondrial ribosomal protein S9provided by MGI
Primary source
MGI:MGI:1916777
See related
Ensembl:ENSMUSG00000060679 AllianceGenome:MGI:1916777
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
S9mt; mg637; Mrp-S9; 2310002A08Rik
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Located in mitochondrion. Is expressed in several structures, including brain; early conceptus; gonad; liver; and thymus primordium. Orthologous to human MRPS9 (mitochondrial ribosomal protein S9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 11.2), heart adult (RPKM 8.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Mrps9 in Genome Data Viewer
Location:
1; 1 B
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (42890393..42944843)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (42851233..42905683)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene DNMT1 associated long intergenic non-coding RNA Neighboring gene predicted gene, 53552 Neighboring gene predicted gene, 23126 Neighboring gene predicted gene, 39633 Neighboring gene G protein-coupled receptor 45 Neighboring gene DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Koc EC, et al. Protein Sci, 2001 Mar. PMID 11344316, Free PMC Article
  2. Genetic determinants of weight of fast- and slow-twitch skeletal muscle in 500-day-old mice of the C57BL/6J and DBA/2J lineage. Lionikas A, et al. Physiol Genomics, 2005 Apr 14. PMID 15687484
  3. Ribosome. The structure of the human mitochondrial ribosome. Amunts A, et al. Science, 2015 Apr 3. PMID 25838379, Free PMC Article
  4. Expression analysis of mammalian mitochondrial ribosomal protein genes. Cheong A, et al. Gene Expr Patterns, 2020 Dec. PMID 32987154, Free PMC Article
  5. Structure and Function of the Mitochondrial Ribosome. Greber BJ, et al. Annu Rev Biochem, 2016 Jun 2. PMID 27023846

See all (33) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC144643

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial inner membrane NAS
Non-traceable Author Statement
more info
 PubMed 
part_of mitochondrial small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
part_of mitochondrial small ribosomal subunit NAS
Non-traceable Author Statement
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
28S ribosomal protein S9, mitochondrial
Names
muscle protein 637

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023514.4 → NP_076003.3  28S ribosomal protein S9, mitochondrial precursor

    See identical proteins and their annotated locations for NP_076003.3

    Status: VALIDATED

    Source sequence(s)
    BC051936, BC116437, BY145802
    Consensus CDS
    CCDS14918.1
    UniProtKB/Swiss-Prot
    Q80W17, Q9D7N3
    Related
    ENSMUSP00000056855.9, ENSMUST00000057208.13
    Conserved Domains (1) summary
    pfam00380
    Location:268 → 390
    Ribosomal_S9; Ribosomal protein S9/S16

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    42890393..42944843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242824.1 → XP_030098684.1  28S ribosomal protein S9, mitochondrial isoform X1

    Conserved Domains (1) summary
    pfam00380
    Location:107 → 229
    Ribosomal_S9; Ribosomal protein S9/S16

  2. XM_036153502.1 → XP_036009395.1  28S ribosomal protein S9, mitochondrial isoform X1

    Conserved Domains (1) summary
    pfam00380
    Location:107 → 229
    Ribosomal_S9; Ribosomal protein S9/S16

RNA

  1. XR_004934199.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D7N3.3 GenPept UniProtKB/Swiss-Prot:Q9D7N3

Gene LinkOut

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