Format

Send to:

Choose Destination

1700029J07Rik RIKEN cDNA 1700029J07 gene [ Mus musculus (house mouse) ]

Gene ID: 69479, updated on 31-Jan-2019

Summary

Official Symbol
1700029J07Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700029J07 geneprovided by MGI
Primary source
MGI:MGI:1916729
See related
Ensembl:ENSMUSG00000071103
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 7.3), bladder adult (RPKM 2.5) and 14 other tissues See more
Orthologs

Genomic context

See 1700029J07Rik in Genome Data Viewer
Location:
8; 8 B1.1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (45939366..45975456, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (47038960..47060606, complement)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene sorbin and SH3 domain containing 2 Neighboring gene sorbin and SH3 domain containing 2, opposite strand Neighboring gene PDZ and LIM domain 3 Neighboring gene coiled-coil domain containing 110 Neighboring gene UFM1-specific peptidase 2 Neighboring gene ankyrin repeat domain 37 Neighboring gene Lrp2 binding protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC130198

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
centrosome ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
UPF0602 protein C4orf47 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033148.3NP_001028320.1  UPF0602 protein C4orf47 homolog

    See identical proteins and their annotated locations for NP_001028320.1

    Status: VALIDATED

    Source sequence(s)
    AC114558
    Consensus CDS
    CCDS22283.1
    UniProtKB/Swiss-Prot
    Q3U1D9
    Related
    ENSMUSP00000092961.1, ENSMUST00000095323.7
    Conserved Domains (1) summary
    pfam15239
    Location:10294
    DUF4586; Domain of unknown function (DUF4586)
  2. NM_001359113.1NP_001346042.1  UPF0602 protein C4orf47 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114558
    Conserved Domains (1) summary
    pfam15239
    Location:10294
    DUF4586; Domain of unknown function (DUF4586)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

    Range
    45939366..45975456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509484.3XP_006509547.1  UPF0602 protein C4orf47 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q3U1D9
    Related
    ENSMUSP00000096383.2, ENSMUST00000098786.2
    Conserved Domains (1) summary
    pfam15239
    Location:10294
    DUF4586; Domain of unknown function (DUF4586)

RNA

  1. XR_378912.3 RNA Sequence

Support Center