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Efcab15 EF-hand calcium binding domain 15 [ Mus musculus (house mouse) ]

Gene ID: 69441, updated on 10-Oct-2020

Summary

Official Symbol
Efcab15provided by MGI
Official Full Name
EF-hand calcium binding domain 15provided by MGI
Primary source
MGI:MGI:1916691
See related
Ensembl:ENSMUSG00000020940
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700023F06Rik
Expression
Restricted expression toward testis adult (RPKM 168.3) See more
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Genomic context

See Efcab15 in Genome Data Viewer
Location:
11; 11 E1
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (103089769..103099374, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (103198943..103208548, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (103060260..103069838, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51919 Neighboring gene formin-like 1 Neighboring gene uncharacterized LOC118567870 Neighboring gene spermatogenesis associated 32 Neighboring gene predicted gene, 51920 Neighboring gene mitogen-activated protein kinase kinase kinase 14 Neighboring gene predicted gene, 34823

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC118352

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC69441

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254724.2NP_001241653.1  uncharacterized protein LOC69441

    Status: VALIDATED

    Source sequence(s)
    AL662804, BF452544, BY706354
    Consensus CDS
    CCDS56814.1
    UniProtKB/TrEMBL
    A2AB62
    Related
    ENSMUSP00000021323.4, ENSMUST00000021323.10
    Conserved Domains (2) summary
    pfam13499
    Location:111167
    EF-hand_7; EF-hand domain pair
    pfam13833
    Location:121173
    EF-hand_8; EF-hand domain pair

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    103089769..103099374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011249227.1XP_011247529.1  uncharacterized protein LOC69441 isoform X1

    Conserved Domains (2) summary
    PTZ00449
    Location:159243
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam13833
    Location:146
    EF-hand_8; EF-hand domain pair

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_027082.1: Suppressed sequence

    Description
    NM_027082.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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