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1700016C15Rik RIKEN cDNA 1700016C15 gene [ Mus musculus (house mouse) ]

Gene ID: 69428, updated on 26-Sep-2022

Summary

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Official Symbol
1700016C15Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700016C15 geneprovided by MGI
Primary source
MGI:MGI:1916678
See related
Ensembl:ENSMUSG00000015962 AllianceGenome:MGI:1916678
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C1orf100 (chromosome 1 open reading frame 100). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 25.5) See more
Orthologs
human all
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Genomic context

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See 1700016C15Rik in Genome Data Viewer
Location:
1; 1 H4
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (177555704..177580875)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (177728137..177753309)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30013 Neighboring gene microRNA 12179 Neighboring gene RIKEN cDNA 2310043L19 gene Neighboring gene predicted gene, 30115 Neighboring gene adenylosuccinate synthetase, non muscle Neighboring gene ribosomal protein S8 pseudogene Neighboring gene cation channel sperm associated auxiliary subunit epsilon 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C1orf100 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027077.2 → NP_081353.1  uncharacterized protein C1orf100 homolog

    See identical proteins and their annotated locations for NP_081353.1

    Status: PROVISIONAL

    Source sequence(s)
    AK006014
    Consensus CDS
    CCDS48462.1
    UniProtKB/Swiss-Prot
    Q9DAA7
    UniProtKB/TrEMBL
    A0A6P5QAL9, A0A8C6GRE6
    Related
    ENSMUSP00000016106.6, ENSMUST00000016106.6
    Conserved Domains (1) summary
    pfam17670
    Location:1 → 142
    DUF5530; Family of unknown function (DUF5530)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    177555704..177580875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496976.5 → XP_006497039.1  uncharacterized protein C1orf100 homolog isoform X1

    See identical proteins and their annotated locations for XP_006497039.1

    UniProtKB/Swiss-Prot
    Q9DAA7
    UniProtKB/TrEMBL
    A0A6P5QAL9, A0A8C6GRE6
    Conserved Domains (1) summary
    pfam17670
    Location:1 → 142
    DUF5530; Family of unknown function (DUF5530)

  2. XM_006496978.5 → XP_006497041.1  uncharacterized protein C1orf100 homolog isoform X2

    Conserved Domains (1) summary
    pfam17670
    Location:1 → 50
    DUF5530; Family of unknown function (DUF5530)

RNA

  1. XR_373615.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DAA7.1 GenPept UniProtKB/Swiss-Prot:Q9DAA7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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