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1700016C15Rik RIKEN cDNA 1700016C15 gene [ Mus musculus (house mouse) ]

Gene ID: 69428, updated on 17-Dec-2020

Summary

Official Symbol
1700016C15Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700016C15 geneprovided by MGI
Primary source
MGI:MGI:1916678
See related
Ensembl:ENSMUSG00000015962
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 25.5) See more
Orthologs
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Genomic context

See 1700016C15Rik in Genome Data Viewer
Location:
1; 1 H4
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (177555704..177580875)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (177728137..177753309)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (179659945..179683436)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30013 Neighboring gene predicted gene, 51282 Neighboring gene RIKEN cDNA 2310043L19 gene Neighboring gene predicted gene, 30115 Neighboring gene adenylosuccinate synthetase, non muscle Neighboring gene ribosomal protein S8 pseudogene Neighboring gene cation channel sperm associated auxiliary subunit epsilon 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C1orf100 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027077.2NP_081353.1  uncharacterized protein C1orf100 homolog

    See identical proteins and their annotated locations for NP_081353.1

    Status: PREDICTED

    Source sequence(s)
    AK006014
    Consensus CDS
    CCDS48462.1
    UniProtKB/Swiss-Prot
    Q9DAA7
    Related
    ENSMUSP00000016106.5, ENSMUST00000016106.5
    Conserved Domains (1) summary
    pfam17670
    Location:1142
    DUF5530; Family of unknown function (DUF5530)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    177555704..177580875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496976.5XP_006497039.1  uncharacterized protein C1orf100 homolog isoform X1

    See identical proteins and their annotated locations for XP_006497039.1

    UniProtKB/Swiss-Prot
    Q9DAA7
    Conserved Domains (1) summary
    pfam17670
    Location:1142
    DUF5530; Family of unknown function (DUF5530)
  2. XM_006496978.5XP_006497041.1  uncharacterized protein C1orf100 homolog isoform X2

    Conserved Domains (1) summary
    pfam17670
    Location:150
    DUF5530; Family of unknown function (DUF5530)

RNA

  1. XR_373615.4 RNA Sequence

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