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1700008O03Rik RIKEN cDNA 1700008O03 gene [ Mus musculus (house mouse) ]

Gene ID: 69349, updated on 5-Mar-2024

Summary

Official Symbol
1700008O03Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700008O03 geneprovided by MGI
Primary source
MGI:MGI:1916599
See related
Ensembl:ENSMUSG00000008028 AllianceGenome:MGI:1916599
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C19orf81 (chromosome 19 open reading frame 81). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 18.3), whole brain E14.5 (RPKM 1.6) and 1 other tissue See more
Orthologs
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Genomic context

Location:
7 B3; 7 28.83 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (44009467..44035116, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (44360043..44385694, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E129 Neighboring gene predicted gene 7238 Neighboring gene C-type lectin domain family 11, member a Neighboring gene SH3 and multiple ankyrin repeat domains 1 Neighboring gene STARR-seq mESC enhancer starr_18792 Neighboring gene predicted gene, 39001 Neighboring gene synaptotagmin III Neighboring gene STARR-positive B cell enhancer ABC_E4924 Neighboring gene STARR-seq mESC enhancer starr_18797 Neighboring gene predicted gene, 39002 Neighboring gene leucine rich repeat containing 4B Neighboring gene predicted gene, 39003

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
putative uncharacterized protein C19orf81 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027049.1NP_081325.1  putative uncharacterized protein C19orf81 homolog

    See identical proteins and their annotated locations for NP_081325.1

    Status: VALIDATED

    Source sequence(s)
    AK005784, BC127243, BF467486
    Consensus CDS
    CCDS52230.1
    UniProtKB/Swiss-Prot
    D3Z070, Q9DAJ9
    Related
    ENSMUSP00000103566.2, ENSMUST00000107933.8
    Conserved Domains (1) summary
    pfam15876
    Location:23179
    DUF4732; Domain of unknown function (DUF4732)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    44009467..44035116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250899.4XP_011249201.1  putative uncharacterized protein C19orf81 homolog isoform X3

    See identical proteins and their annotated locations for XP_011249201.1

    UniProtKB/TrEMBL
    H3BIU9
    Conserved Domains (1) summary
    pfam15876
    Location:2148
    DUF4732; Domain of unknown function (DUF4732)
  2. XM_030242969.2XP_030098829.1  putative uncharacterized protein C19orf81 homolog isoform X4

    Conserved Domains (1) summary
    pfam15876
    Location:5096
    DUF4732; Domain of unknown function (DUF4732)
  3. XM_030242968.1XP_030098828.1  putative uncharacterized protein C19orf81 homolog isoform X4

    Conserved Domains (1) summary
    pfam15876
    Location:5096
    DUF4732; Domain of unknown function (DUF4732)
  4. XM_017312286.1XP_017167775.1  putative uncharacterized protein C19orf81 homolog isoform X1

    Conserved Domains (1) summary
    pfam15876
    Location:155311
    DUF4732; Domain of unknown function (DUF4732)
  5. XM_006541172.5XP_006541235.1  putative uncharacterized protein C19orf81 homolog isoform X3

    See identical proteins and their annotated locations for XP_006541235.1

    UniProtKB/TrEMBL
    H3BIU9
    Related
    ENSMUSP00000123280.2, ENSMUST00000150886.2
    Conserved Domains (1) summary
    pfam15876
    Location:2148
    DUF4732; Domain of unknown function (DUF4732)
  6. XM_011250900.4XP_011249202.1  putative uncharacterized protein C19orf81 homolog isoform X4

    Conserved Domains (1) summary
    pfam15876
    Location:5096
    DUF4732; Domain of unknown function (DUF4732)
  7. XM_006541171.2XP_006541234.1  putative uncharacterized protein C19orf81 homolog isoform X2

    Conserved Domains (1) summary
    pfam15876
    Location:155218
    DUF4732; Domain of unknown function (DUF4732)