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1700007K13Rik RIKEN cDNA 1700007K13 gene [ Mus musculus (house mouse) ]

Gene ID: 69327, updated on 31-Jan-2019

Summary

Official Symbol
1700007K13Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700007K13 geneprovided by MGI
Primary source
MGI:MGI:1916577
See related
Ensembl:ENSMUSG00000026831
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rbest47
Expression
Biased expression in testis adult (RPKM 17.2), lung adult (RPKM 3.3) and 1 other tissue See more
Orthologs

Genomic context

See 1700007K13Rik in Genome Data Viewer
Location:
2; 2 A3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (28462001..28466324, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (28317521..28321844, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene 13373 Neighboring gene protein phosphatase 1, regulatory subunit 26 Neighboring gene mitochondrial ribosomal protein S2 Neighboring gene ribosomal protein SA, pseudogene 9 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (2) 

General gene information

Homology

Clone Names

  • MGC118342

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
cellular response to DNA damage stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular response to UV-C IMP
Inferred from Mutant Phenotype
more info
PubMed 
determination of left/right symmetry IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 

General protein information

Preferred Names
UPF0691 protein C9orf116 homolog
Names
p53-induced expression in RB-null cells protein 1
pierce 1
pierce1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027040.1NP_081316.1  UPF0691 protein C9orf116 homolog

    See identical proteins and their annotated locations for NP_081316.1

    Status: PROVISIONAL

    Source sequence(s)
    BC099566
    Consensus CDS
    CCDS15837.1
    UniProtKB/Swiss-Prot
    Q5BN45
    Related
    ENSMUSP00000083557.4, ENSMUST00000086370.10
    Conserved Domains (1) summary
    pfam14892
    Location:49137
    DUF4490; Domain of unknown function (DUF4490)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    28462001..28466324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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