H1F0 H1 histone family, member 0 [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: H1F0provided by CGNC
Official Full Name: H1 histone family, member 0provided by CGNC
Primary source: CGNC:9356
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: H5
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	1	NC_052532.1 (51169503..51170388, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	1	NC_052573.1 (51466255..51467140, complement)

Chromosome 1 - NC_052532.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Taken together, these results suggest that a small number of residues in the globular domain of a linker histone can control its binding location on the nucleosome and higher-order chromatin structure.
Title: A Small Number of Residues Can Determine if Linker Histones Are Bound On or Off Dyad in the Chromatosome.
Data show that a promotion of chromatin folding in terminally differentiated avian blood cells requires the presence of either histone H5 in erythrocytes or myeloid and erythroid nuclear termination stage-specific protein (MENT) in white blood cells.
Title: Chromatin compaction in terminally differentiated avian blood cells: the role of linker histone H5 and non-histone protein MENT.

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General gene information

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Homology

Orthologs from Annotation Pipeline: 481 organisms have orthologs with human gene H1F0
Orthologs

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables double-stranded DNA binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables nucleic acid binding	IDA Inferred from Direct Assay more info	PubMed
enables nucleosomal DNA binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables nucleosomal DNA binding	IMP Inferred from Mutant Phenotype more info	PubMed
enables structural constituent of chromatin	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in chromatin organization	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in chromosome condensation	IBA Inferred from Biological aspect of Ancestor more info	PubMed
involved_in negative regulation of DNA recombination	IBA Inferred from Biological aspect of Ancestor more info	PubMed
involved_in nucleosome assembly	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
part_of nucleosome	IDA Inferred from Direct Assay more info	PubMed
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: histone H5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001044673.2 → NP_001038138.1 histone H5

See identical proteins and their annotated locations for NP_001038138.1

Status: VALIDATED

Source sequence(s)

JAENSK010000012

UniProtKB/Swiss-Prot

P02259

Conserved Domains (1) summary

pfam00538
Location:26 → 97

Linker_histone; linker histone H1 and H5 family

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

51169503..51170388 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

51466255..51467140 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)