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1700012B09Rik RIKEN cDNA 1700012B09 gene [ Mus musculus (house mouse) ]

Gene ID: 69325, updated on 31-Jan-2019

Summary

Official Symbol
1700012B09Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700012B09 geneprovided by MGI
Primary source
MGI:MGI:1916575
See related
Ensembl:ENSMUSG00000031927
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700007P19Rik
Expression
Restricted expression toward testis adult (RPKM 25.8) See more
Orthologs

Genomic context

See 1700012B09Rik in Genome Data Viewer
Location:
9; 9 A2
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (14756592..14771034, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (14562635..14575474, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene piwi-like RNA-mediated gene silencing 4 Neighboring gene sodium channel modifier 1 pseudogene Neighboring gene fucosyltransferase 4 Neighboring gene ankyrin repeat domain 49 Neighboring gene MRE11A homolog A, double strand break repair nuclease

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Clone Names

  • MGC107243

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
NOT cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cell projection IEA
Inferred from Electronic Annotation
more info
 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
ciliary basal body IMP
Inferred from Mutant Phenotype
more info
PubMed 
ciliary base EXP
Inferred from Experiment
more info
PubMed 
ciliary base IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C11orf97 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029306.3NP_083582.2  uncharacterized protein C11orf97 homolog

    See identical proteins and their annotated locations for NP_083582.2

    Status: VALIDATED

    Source sequence(s)
    AK005747, BE949439, CF105954
    Consensus CDS
    CCDS40536.1
    UniProtKB/Swiss-Prot
    Q9DAE7
    UniProtKB/TrEMBL
    Q9DAL1
    Related
    ENSMUSP00000049826.3, ENSMUST00000060330.4

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

    Range
    14756592..14771034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_379134.3 RNA Sequence

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