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Cfap90 cilia and flagella associated protein 90 [ Mus musculus (house mouse) ]

Gene ID: 69315, updated on 9-Mar-2023

Summary

Official Symbol
Cfap90provided by MGI
Official Full Name
cilia and flagella associated protein 90provided by MGI
Primary source
MGI:MGI:1916565
See related
Ensembl:ENSMUSG00000021534 AllianceGenome:MGI:1916565
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700001L19Rik
Summary
Predicted to be located in ciliary basal body. Is expressed in nervous system and neural retina. Orthologous to human C5orf49 (chromosome 5 open reading frame 49). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 24.4), frontal lobe adult (RPKM 3.2) and 2 other tissues See more
Orthologs
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Genomic context

See Cfap90 in Genome Data Viewer
Location:
13; 13 B3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (68745558..68762350)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (68597439..68614231)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1330 Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Neighboring gene FAST kinase domains 3 Neighboring gene predicted gene, 34903 Neighboring gene adenylate cyclase 2 Neighboring gene farnesyl diphosphate synthetase pseudogene Neighboring gene predicted gene, 35161 Neighboring gene predicted gene, 35049

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in axoneme ISO
Inferred from Sequence Orthology
more info
 
located_in ciliary basal body ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
uncharacterized protein CFAP90
Names
Y regulated sperm protein
uncharacterized protein C5orf49 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027035.1NP_081311.1  uncharacterized protein CFAP90

    See identical proteins and their annotated locations for NP_081311.1

    Status: PROVISIONAL

    Source sequence(s)
    AK138387
    Consensus CDS
    CCDS49306.1
    UniProtKB/Swiss-Prot
    Q9DAR0
    Related
    ENSMUSP00000022007.7, ENSMUST00000022007.8
    Conserved Domains (1) summary
    pfam15074
    Location:77166
    DUF4541; Domain of unknown function (DUF4541)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    68745558..68762350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)