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1700001L19Rik RIKEN cDNA 1700001L19 gene [ Mus musculus (house mouse) ]

Gene ID: 69315, updated on 25-Sep-2020

Summary

Official Symbol
1700001L19Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700001L19 geneprovided by MGI
Primary source
MGI:MGI:1916565
See related
Ensembl:ENSMUSG00000021534
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 24.4), frontal lobe adult (RPKM 3.2) and 2 other tissues See more
Orthologs
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Genomic context

See 1700001L19Rik in Genome Data Viewer
Location:
13; 13 B3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (68745558..68762350)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (68597439..68614231)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (68736316..68753108)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1330 Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Neighboring gene FAST kinase domains 3 Neighboring gene predicted gene, 34903 Neighboring gene adenylate cyclase 2 Neighboring gene farnesyl diphosphate synthetase pseudogene Neighboring gene predicted gene, 35161 Neighboring gene predicted gene, 35049

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
ciliary basal body ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
uncharacterized protein C5orf49 homolog
Names
Y regulated sperm protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027035.1NP_081311.1  uncharacterized protein C5orf49 homolog

    See identical proteins and their annotated locations for NP_081311.1

    Status: PREDICTED

    Source sequence(s)
    AK138387
    Consensus CDS
    CCDS49306.1
    UniProtKB/Swiss-Prot
    Q9DAR0
    Related
    ENSMUSP00000022007.6, ENSMUST00000022007.7
    Conserved Domains (1) summary
    pfam15074
    Location:77166
    DUF4541; Domain of unknown function (DUF4541)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    68745558..68762350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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