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Lrrc46 leucine rich repeat containing 46 [ Mus musculus (house mouse) ]

Gene ID: 69297, updated on 5-Mar-2024

Summary

Official Symbol
Lrrc46provided by MGI
Official Full Name
leucine rich repeat containing 46provided by MGI
Primary source
MGI:MGI:1916547
See related
Ensembl:ENSMUSG00000020878 AllianceGenome:MGI:1916547
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700006D24Rik
Summary
Is expressed in 4th ventricle lateral recess; lateral ventricle choroid plexus; and olfactory epithelium. Orthologous to human LRRC46 (leucine rich repeat containing 46). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 330.8) See more
Orthologs
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Genomic context

See Lrrc46 in Genome Data Viewer
Location:
11 D; 11 60.65 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (96925428..96932195, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (97034602..97041369, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene trans-acting transcription factor 6 Neighboring gene STARR-seq mESC enhancer starr_30578 Neighboring gene predicted gene 11532 Neighboring gene secernin 2 Neighboring gene predicted gene 11533 Neighboring gene STARR-positive B cell enhancer ABC_E909 Neighboring gene mitochondrial ribosomal protein L10 Neighboring gene STARR-positive B cell enhancer ABC_E8445 Neighboring gene oxysterol binding protein-like 7 Neighboring gene predicted gene, 51917

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General protein information

Preferred Names
leucine-rich repeat-containing protein 46

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027026.2NP_081302.2  leucine-rich repeat-containing protein 46

    See identical proteins and their annotated locations for NP_081302.2

    Status: PROVISIONAL

    Source sequence(s)
    BC022723
    Consensus CDS
    CCDS25311.1
    UniProtKB/Swiss-Prot
    Q8R1Z3, Q9DAP0
    Related
    ENSMUSP00000021251.7, ENSMUST00000021251.7
    Conserved Domains (2) summary
    sd00031
    Location:5071
    LRR_1; leucine-rich repeat [structural motif]
    cd21340
    Location:60146
    PPP1R42; protein phosphatase 1 regulatory subunit 42

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    96925428..96932195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)