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Pebp4 phosphatidylethanolamine binding protein 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691997, updated on 5-Mar-2024

Summary

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Symbol
Pebp4provided by RGD
Full Name
phosphatidylethanolamine binding protein 4provided by RGD
Primary source
RGD:1593295
See related
Ensembl:ENSRNOG00000026247 AllianceGenome:RGD:1593295
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
AABR07018326.1
Summary
Orthologous to human PEBP4 (phosphatidylethanolamine binding protein 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 136.6) See more
Orthologs
human mouse all
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Genomic context

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See Pebp4 in Genome Data Viewer
Location:
15p11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (51328127..51543920)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (44920946..45134188)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (51528587..51615204) , (51644948..51740626)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103693695 Neighboring gene uncharacterized LOC102550955 Neighboring gene early growth response 3 Neighboring gene bridging integrator 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Principe S, et al. Proteomics, 2013 May. PMID 23533145, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
phosphatidylethanolamine-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    51328127..51543920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008770836.4 → XP_008769058.2  phosphatidylethanolamine-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8I6GL87, A6HTI3
    Related
    ENSRNOP00000095653.1
    Conserved Domains (1) summary
    cd00866
    Location:60 → 212
    PEBP_euk; PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes

  2. XM_063274888.1 → XP_063130958.1  phosphatidylethanolamine-binding protein 4 isoform X3

  3. XM_039093942.2 → XP_038949870.1  phosphatidylethanolamine-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8I6GL87
    Conserved Domains (1) summary
    cd00866
    Location:60 → 190
    PEBP_euk; PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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