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LOC691551 similar to F28B3.5a [ Rattus norvegicus (Norway rat) ]

Gene ID: 691551, updated on 21-Jul-2018

Summary

Symbol
LOC691551provided by RGD
Full Name
similar to F28B3.5aprovided by RGD
Primary source
RGD:1582763
See related
Ensembl:ENSRNOG00000028473
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 22.8), Kidney (RPKM 6.6) and 1 other tissue See more

Genomic context

See LOC691551 in Genome Data Viewer
Location:
1q36
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (190914807..190947001)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (197840974..197873129)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108349629 Neighboring gene cerebellar degeneration-related protein 2 Neighboring gene methyltransferase like 9 Neighboring gene immunoglobulin superfamily, member 6 Neighboring gene otoancorin

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    190914807..190947001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001078789.4XP_001078789.3  transmembrane protein 180 isoform X1

    See identical proteins and their annotated locations for XP_001078789.3

    UniProtKB/TrEMBL
    F1M4T5
    Related
    ENSRNOP00000035359.6, ENSRNOT00000039447.6
    Conserved Domains (1) summary
    pfam13347
    Location:68489
    MFS_2; MFS/sugar transport protein
  2. XM_017590219.1XP_017445708.1  transmembrane protein 180 isoform X4

  3. XM_017590218.1XP_017445707.1  transmembrane protein 180 isoform X3

  4. XM_006230179.2XP_006230241.1  transmembrane protein 180 isoform X6

    See identical proteins and their annotated locations for XP_006230241.1

    Conserved Domains (1) summary
    pfam13347
    Location:68431
    MFS_2; MFS/sugar transport protein
  5. XM_017590217.1XP_017445706.1  transmembrane protein 180 isoform X2

  6. XM_017590220.1XP_017445709.1  transmembrane protein 180 isoform X5

    Conserved Domains (1) summary
    pfam13347
    Location:9430
    MFS_2; MFS/sugar transport protein
  7. XM_017590221.1XP_017445710.1  transmembrane protein 180 isoform X5

    Conserved Domains (1) summary
    pfam13347
    Location:9430
    MFS_2; MFS/sugar transport protein

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    173259157..173291350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003753357.3XP_003753405.2  transmembrane protein 180 isoform X1

    See identical proteins and their annotated locations for XP_003753405.2

    UniProtKB/TrEMBL
    F1M4T5
    Conserved Domains (1) summary
    pfam13347
    Location:68489
    MFS_2; MFS/sugar transport protein
  2. XM_017591046.1XP_017446535.1  transmembrane protein 180 isoform X4

  3. XM_017591044.1XP_017446533.1  transmembrane protein 180 isoform X3

  4. XM_006223494.2XP_006223556.1  transmembrane protein 180 isoform X6

    See identical proteins and their annotated locations for XP_006223556.1

    Conserved Domains (1) summary
    pfam13347
    Location:68431
    MFS_2; MFS/sugar transport protein
  5. XM_017591042.1XP_017446531.1  transmembrane protein 180 isoform X2

  6. XM_017591048.1XP_017446537.1  transmembrane protein 180 isoform X5

    Conserved Domains (1) summary
    pfam13347
    Location:9430
    MFS_2; MFS/sugar transport protein
  7. XM_017591050.1XP_017446539.1  transmembrane protein 180 isoform X5

    Conserved Domains (1) summary
    pfam13347
    Location:9430
    MFS_2; MFS/sugar transport protein
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