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Oxct1 3-oxoacid CoA transferase 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690163, updated on 5-Aug-2018
Symbol
Oxct1provided by RGD
Full Name
3-oxoacid CoA transferase 1provided by RGD
Primary source
RGD:1584008
See related
Ensembl:ENSRNOG00000043094
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
SCOT
Expression
Biased expression in Heart (RPKM 3677.2), Kidney (RPKM 1613.1) and 6 other tissues See more
Orthologs
See Oxct1 in Genome Data Viewer
Location:
2q16
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (53859738..54007733)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (72891713..73037617)

Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene similar to expressed sequence AW549877 Neighboring gene F-box protein 4 Neighboring gene similar to eukaryotic translation elongation factor 1 alpha 1 Neighboring gene uncharacterized LOC108349953

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC187935

Gene Ontology Provided by RGD

Function Evidence Code Pubs
3-oxoacid CoA-transferase activity IDA
Inferred from Direct Assay
more info
PubMed 
3-oxoacid CoA-transferase activity ISO
Inferred from Sequence Orthology
more info
 
protein homodimerization activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
adipose tissue development IEP
Inferred from Expression Pattern
more info
PubMed 
brain development IEP
Inferred from Expression Pattern
more info
PubMed 
cellular ketone body metabolic process IEP
Inferred from Expression Pattern
more info
PubMed 
cellular ketone body metabolic process ISO
Inferred from Sequence Orthology
more info
 
heart development IEP
Inferred from Expression Pattern
more info
PubMed 
ketone body catabolic process IEA
Inferred from Electronic Annotation
more info
 
ketone body catabolic process ISO
Inferred from Sequence Orthology
more info
 
ketone catabolic process IEA
Inferred from Electronic Annotation
more info
 
ketone catabolic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of insulin secretion involved in cellular response to glucose stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to activity IEP
Inferred from Expression Pattern
more info
PubMed 
response to drug IEP
Inferred from Expression Pattern
more info
PubMed 
response to ethanol IEP
Inferred from Expression Pattern
more info
PubMed 
response to hormone IEP
Inferred from Expression Pattern
more info
PubMed 
response to nutrient IEP
Inferred from Expression Pattern
more info
PubMed 
response to starvation IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
Names
scot-S
somatic-type succinyl-CoA:3-oxoacid CoA-transferase
succinyl-CoA:3-ketoacid CoA transferase
succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial-like
NP_001121052.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127580.1NP_001121052.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial precursor

    See identical proteins and their annotated locations for NP_001121052.1

    Status: PROVISIONAL

    Source sequence(s)
    BC166478
    UniProtKB/Swiss-Prot
    B2GV06
    Related
    ENSRNOP00000063646.2, ENSRNOT00000065313.3
    Conserved Domains (3) summary
    COG1788
    Location:41274
    AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]
    COG4670
    Location:48517
    YdiF; Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism]
    cl00339
    Location:300508
    SugarP_isomerase; SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

    Range
    53859738..54007733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000070.1 Alternate Rn_Celera

    Range
    48914408..49050216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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