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Thap7 THAP domain containing 7 [ Mus musculus (house mouse) ]

Gene ID: 69009, updated on 23-Jun-2021

Summary

Official Symbol
Thap7provided by MGI
Official Full Name
THAP domain containing 7provided by MGI
Primary source
MGI:MGI:1916259
See related
Ensembl:ENSMUSG00000022760
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810004B07Rik
Expression
Ubiquitous expression in ovary adult (RPKM 39.8), adrenal adult (RPKM 37.8) and 28 other tissues See more
Orthologs
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Genomic context

See Thap7 in Genome Data Viewer
Location:
16 A3; 16
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (17345823..17349975, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (17527959..17531151, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (17528075..17531145, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene apoptosis-inducing factor, mitochondrion-associated 3 Neighboring gene leucine-zipper-like transcriptional regulator, 1 Neighboring gene leucine rich repeat containing 74B Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables C2H2 zinc finger domain binding ISO
Inferred from Sequence Orthology
more info
 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables general transcription initiation factor binding ISO
Inferred from Sequence Orthology
more info
 
enables histone deacetylase binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables lysine-acetylated histone binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables methylated histone binding ISO
Inferred from Sequence Orthology
more info
 
enables nucleosomal histone binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphorylated histone binding ISO
Inferred from Sequence Orthology
more info
 
enables protein N-terminus binding ISO
Inferred from Sequence Orthology
more info
 
enables transcription corepressor binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear membrane ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
THAP domain-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026909.2NP_081185.1  THAP domain-containing protein 7

    See identical proteins and their annotated locations for NP_081185.1

    Status: PROVISIONAL

    Source sequence(s)
    AC113006
    Consensus CDS
    CCDS28004.1
    UniProtKB/Swiss-Prot
    Q8VCZ3
    Related
    ENSMUSP00000097701.4, ENSMUST00000100125.12
    Conserved Domains (2) summary
    smart00980
    Location:493
    THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
    PHA03247
    Location:111221
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    17345823..17349975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246003.4XP_011244305.1  THAP domain-containing protein 7 isoform X4

  2. XM_006522513.5XP_006522576.1  THAP domain-containing protein 7 isoform X3

    Conserved Domains (1) summary
    PHA03247
    Location:59169
    PHA03247; large tegument protein UL36; Provisional
  3. XM_030249261.2XP_030105121.1  THAP domain-containing protein 7 isoform X2

    Conserved Domains (1) summary
    smart00980
    Location:474
    THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
  4. XM_036160107.1XP_036016000.1  THAP domain-containing protein 7 isoform X4

    Related
    ENSMUSP00000156319.2, ENSMUST00000232041.2
  5. XM_006522511.5XP_006522574.1  THAP domain-containing protein 7 isoform X1

    See identical proteins and their annotated locations for XP_006522574.1

    UniProtKB/Swiss-Prot
    Q8VCZ3
    Related
    ENSMUSP00000156168.2, ENSMUST00000231548.2
    Conserved Domains (2) summary
    smart00980
    Location:493
    THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
    PHA03247
    Location:111221
    PHA03247; large tegument protein UL36; Provisional
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