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Crygf crystallin, gamma F [ Rattus norvegicus (Norway rat) ]

Gene ID: 689947, updated on 30-Sep-2021

Summary

Official Symbol
Crygfprovided by RGD
Official Full Name
crystallin, gamma Fprovided by RGD
Primary source
RGD:1586353
See related
EnsemblRapid:ENSRNOG00000032869
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Len; Cryg6
Expression
Low expression observed in reference dataset See more
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Genomic context

See Crygf in Genome Data Viewer
Location:
9q32
Exon count:
4
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (67448265..67450429)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (72933304..72935468)

Chromosome 9 - NC_051344.1Genomic Context describing neighboring genes Neighboring gene similar to transcription factor 19 Neighboring gene U4 spliceosomal RNA Neighboring gene splicing factor, arginine/serine-rich 12-like Neighboring gene microtubule-associated protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural constituent of eye lens IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in lens development in camera-type eye IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in lens development in camera-type eye IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in visual perception IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
gamma-crystallin F
Names
crystallin, gamma polypeptide 6
gamma-F-crystallin
gamma-crystallin 4-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109557.1NP_001103027.1  gamma-crystallin F

    See identical proteins and their annotated locations for NP_001103027.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474044
    UniProtKB/TrEMBL
    G3V9F6
    Related
    ENSRNOP00000045818.3, ENSRNOT00000041632.4
    Conserved Domains (2) summary
    smart00247
    Location:382
    XTALbg; Beta/gamma crystallins
    pfam00030
    Location:89170
    Crystall; Beta/Gamma crystallin

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051344.1 Reference mRatBN7.2 Primary Assembly

    Range
    67448265..67450429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039084219.1XP_038940147.1  gamma-crystallin F isoform X1

    Conserved Domains (2) summary
    smart00247
    Location:382
    XTALbg; Beta/gamma crystallins
    pfam00030
    Location:90171
    Crystall; Beta/Gamma crystallin
  2. XM_039084220.1XP_038940148.1  gamma-crystallin F isoform X2

    Conserved Domains (1) summary
    smart00247
    Location:382
    XTALbg; Beta/gamma crystallins
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