Format

Send to:

Choose Destination

Crygs crystallin, gamma S [ Rattus norvegicus (Norway rat) ]

Gene ID: 689897, updated on 21-Jul-2018

Summary

Official Symbol
Crygsprovided by RGD
Official Full Name
crystallin, gamma Sprovided by RGD
Primary source
RGD:1587483
See related
Ensembl:ENSRNOG00000038355
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 3.0), Liver (RPKM 1.7) and 9 other tissues See more
Orthologs

Genomic context

See Crygs in Genome Data Viewer
Location:
11q23
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (81796891..81802172)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 11 NC_005110.3 (84884805..84889998)

Chromosome 11 - NC_005110.4Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B11 Neighboring gene TBCC domain containing 1 Neighboring gene uncharacterized LOC100911962 Neighboring gene hCG2040565-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
structural constituent of eye lens IEA
Inferred from Electronic Annotation
more info
 
structural constituent of eye lens ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
lens development in camera-type eye IEA
Inferred from Electronic Annotation
more info
 
lens development in camera-type eye ISO
Inferred from Sequence Orthology
more info
 
morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 
morphogenesis of an epithelium ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
gamma-crystallin S
Names
beta-crystallin S
gamma-S-crystallin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109553.1NP_001103023.1  gamma-crystallin S

    See identical proteins and their annotated locations for NP_001103023.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473999
    UniProtKB/Swiss-Prot
    P0C5E9
    Related
    ENSRNOP00000055204.2, ENSRNOT00000058402.2
    Conserved Domains (1) summary
    pfam00030
    Location:786
    Crystall; Beta/Gamma crystallin

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005110.4 Reference Rnor_6.0 Primary Assembly

    Range
    81796891..81802172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000079.1 Alternate Rn_Celera

    Range
    77076320..77081919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center