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Fam216a family with sequence similarity 216, member A [ Mus musculus (house mouse) ]

Gene ID: 68948, updated on 18-Apr-2024

Summary

Official Symbol
Fam216aprovided by MGI
Official Full Name
family with sequence similarity 216, member Aprovided by MGI
Primary source
MGI:MGI:1916198
See related
Ensembl:ENSMUSG00000029463 AllianceGenome:MGI:1916198
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1500011H22Rik
Summary
Is expressed in central nervous system; ganglia; incisor; and sensory organ. Orthologous to human FAM216A (family with sequence similarity 216 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 74.2), CNS E18 (RPKM 49.0) and 23 other tissues See more
Orthologs
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Genomic context

Location:
5 F; 5 62.33 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (122502647..122510405, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (122364584..122372342, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700112N08 gene Neighboring gene STARR-seq mESC enhancer starr_14278 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:122738438-122738621 Neighboring gene PTC7 protein phosphatase homolog Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:122760748-122760949 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:122761679-122761976 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:122767369-122767570 Neighboring gene RAD9 checkpoint clamp component B Neighboring gene STARR-positive B cell enhancer ABC_E2761 Neighboring gene VPS29 retromer complex component Neighboring gene STARR-seq mESC enhancer starr_14283 Neighboring gene GPN-loop GTPase 3 Neighboring gene predicted gene, 32853 Neighboring gene STARR-positive B cell enhancer ABC_E4787 Neighboring gene STARR-positive B cell enhancer ABC_E8077 Neighboring gene actin related protein 2/3 complex, subunit 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
protein FAM216A
Names
uncharacterized protein C12orf24 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026883.4NP_081159.1  protein FAM216A

    See identical proteins and their annotated locations for NP_081159.1

    Status: VALIDATED

    Source sequence(s)
    AC113285
    Consensus CDS
    CCDS39257.1
    UniProtKB/Swiss-Prot
    Q3UD74, Q6PFA4, Q9DB54
    Related
    ENSMUSP00000031419.6, ENSMUST00000031419.6
    Conserved Domains (1) summary
    pfam15107
    Location:53155
    FAM216B; FAM216B protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    122502647..122510405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)