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Tsga13 testis specific, 13 [ Rattus norvegicus (Norway rat) ]

Gene ID: 688848, updated on 25-Jan-2022

Summary

Official Symbol
Tsga13provided by RGD
Official Full Name
testis specific, 13provided by RGD
Primary source
RGD:1584118
See related
Ensembl:ENSRNOG00000011108 AllianceGenome:RGD:1584118
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human TSGA13 (testis specific 13). [provided by Alliance of Genome Resources, Nov 2021]
Expression
Restricted expression toward (RPKM 63.0) See more
Orthologs
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Genomic context

See Tsga13 in Genome Data Viewer
Location:
4q22
Exon count:
9
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (59501773..59522925, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (58195424..58216712, complement)

Chromosome 4 - NC_051339.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102252 Neighboring gene mesoderm specific transcript Neighboring gene COPI coat complex subunit gamma 2 Neighboring gene interferon-induced transmembrane protein 2 pseudogene Neighboring gene Kruppel-like factor 14

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

General protein information

Preferred Names
testis-specific gene 13 protein
Names
testis specific gene A13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107851.1NP_001101321.1  testis-specific gene 13 protein

    See identical proteins and their annotated locations for NP_001101321.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473959
    UniProtKB/TrEMBL
    D3ZMN0
    Related
    ENSRNOP00000015135.5, ENSRNOT00000015134.8
    Conserved Domains (1) summary
    pfam14994
    Location:3268
    TSGA13; Testis-specific gene 13 protein

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051339.1 Reference mRatBN7.2 Primary Assembly

    Range
    59501773..59522925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108375.1XP_038964303.1  testis-specific gene 13 protein isoform X1

    Conserved Domains (1) summary
    pfam14994
    Location:1239
    TSGA13; Testis-specific gene 13 protein
  2. XM_039108376.1XP_038964304.1  testis-specific gene 13 protein isoform X2

    Conserved Domains (1) summary
    pfam14994
    Location:1124
    TSGA13; Testis-specific gene 13 protein
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