Format

Send to:

Choose Destination

Rundc3b RUN domain containing 3B [ Rattus norvegicus (Norway rat) ]

Gene ID: 688590, updated on 9-Dec-2018

Summary

Official Symbol
Rundc3bprovided by RGD
Official Full Name
RUN domain containing 3Bprovided by RGD
Primary source
RGD:1587590
See related
Ensembl:ENSRNOG00000008463
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 73.2), Testes (RPKM 10.0) and 3 other tissues See more
Orthologs

Genomic context

See Rundc3b in Genome Data Viewer
Location:
4q12
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (22443727..22589526)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (22380390..22518353)

Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103692045 Neighboring gene ATP-binding cassette, subfamily B (MDR/TAP), member 1B Neighboring gene ATP binding cassette subfamily B member 1A Neighboring gene solute carrier family 25, member 40 Neighboring gene protein DBF4 homolog A-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC124740

General protein information

Preferred Names
RUN domain-containing protein 3B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001047116.1NP_001040581.1  RUN domain-containing protein 3B

    See identical proteins and their annotated locations for NP_001040581.1

    Status: PROVISIONAL

    Source sequence(s)
    BC107563
    UniProtKB/Swiss-Prot
    Q3B7K9
    Related
    ENSRNOP00000035622.4, ENSRNOT00000030224.5
    Conserved Domains (1) summary
    pfam02759
    Location:61184
    RUN; RUN domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

    Range
    22443727..22589526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006236003.3XP_006236065.1  RUN domain-containing protein 3B isoform X1

    See identical proteins and their annotated locations for XP_006236065.1

    UniProtKB/TrEMBL
    A0A0G2JVF1
    Related
    ENSRNOP00000069461.1, ENSRNOT00000087657.1
    Conserved Domains (1) summary
    pfam02759
    Location:61184
    RUN; RUN domain

Alternate Rn_Celera

Genomic

  1. AC_000072.1 Alternate Rn_Celera

    Range
    20954615..21085289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center