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Mrps18c mitochondrial ribosomal protein S18C [ Mus musculus (house mouse) ]

Gene ID: 68735, updated on 30-Apr-2024

Summary

Official Symbol
Mrps18cprovided by MGI
Official Full Name
mitochondrial ribosomal protein S18Cprovided by MGI
Primary source
MGI:MGI:1915985
See related
Ensembl:ENSMUSG00000016833 AllianceGenome:MGI:1915985
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110037D14Rik
Summary
Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Located in mitochondrion. Is expressed in several structures, including alimentary system; brain; early conceptus; foot mesenchyme; and genitourinary system. Orthologous to human MRPS18C (mitochondrial ribosomal protein S18C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 32.7), liver E14 (RPKM 32.4) and 26 other tissues See more
Orthologs
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Genomic context

See Mrps18c in Genome Data Viewer
Location:
5 E4; 5 48.52 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (100946625..100952333)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (100798759..100804467)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36619 Neighboring gene helicase, POLQ-like Neighboring gene STARR-positive B cell enhancer ABC_E6351 Neighboring gene BRCA1 A complex subunit Neighboring gene predicted gene, 26286

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in mitochondrial translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in mitochondrial inner membrane NAS
Non-traceable Author Statement
more info
PubMed 
part_of mitochondrial small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of mitochondrial small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
part_of mitochondrial small ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
located_in mitochondrion HDA PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small ribosomal subunit protein bS18m
Names
28S ribosomal protein S18-1, mitochondrial
28S ribosomal protein S18c, mitochondrial
MRP-S18-1
MRP-S18-c
S18mt-c
mrps18-c

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026826.1NP_081102.1  small ribosomal subunit protein bS18m

    See identical proteins and their annotated locations for NP_081102.1

    Status: PROVISIONAL

    Source sequence(s)
    BC028442
    Consensus CDS
    CCDS19468.1
    UniProtKB/Swiss-Prot
    Q3UKN5, Q8R2L5, Q9D100
    UniProtKB/TrEMBL
    Q8BTZ9
    Related
    ENSMUSP00000016977.9, ENSMUST00000016977.15
    Conserved Domains (1) summary
    pfam01084
    Location:73121
    Ribosomal_S18; Ribosomal protein S18

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    100946625..100952333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)