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Ccdc167 coiled-coil domain containing 167 [ Mus musculus (house mouse) ]

Gene ID: 68597, updated on 31-Jan-2019

Summary

Official Symbol
Ccdc167provided by MGI
Official Full Name
coiled-coil domain containing 167provided by MGI
Primary source
MGI:MGI:1915847
See related
Ensembl:ENSMUSG00000024018
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110021J02Rik
Expression
Ubiquitous expression in cerebellum adult (RPKM 7.0), CNS E11.5 (RPKM 5.9) and 28 other tissues See more
Orthologs

Genomic context

See Ccdc167 in Genome Data Viewer
Location:
17 A3.3; 17
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (29695977..29717017, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (29832922..29853962, complement)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 28043 Neighboring gene ring finger protein 8 Neighboring gene predicted gene, 20161 Neighboring gene cap methyltransferase 1 Neighboring gene MAM domain containing glycosylphosphatidylinositol anchor 1 Neighboring gene predicted gene, 16758

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 167
Names
transmembrane and coiled-coil domain-containing protein C6orf129 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163741.2NP_001157213.1  coiled-coil domain-containing protein 167 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Isoform 1 contains an in-frame start site twelve codons upstream from the currently annotated site, but Kozak sequence considerations and orthology data support use of the downstream AUG.
    Source sequence(s)
    AC154279, AK049389, BP754204, BY067347
    Consensus CDS
    CCDS50052.1
    UniProtKB/Swiss-Prot
    Q9D162
    Related
    ENSMUSP00000116591.1, ENSMUST00000129091.8
    Conserved Domains (1) summary
    pfam15188
    Location:1090
    CCDC-167; Coiled-coil domain-containing protein 167
  2. NM_026782.2NP_081058.1  coiled-coil domain-containing protein 167 isoform 2

    See identical proteins and their annotated locations for NP_081058.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice pattern in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1. Isoform 2 contains an in-frame start site twelve codons upstream from the currently annotated site, but Kozak sequence considerations and orthology data support use of the downstream AUG.
    Source sequence(s)
    BC022730, BY067347
    Consensus CDS
    CCDS50051.1
    UniProtKB/Swiss-Prot
    Q9D162
    Related
    ENSMUSP00000123612.1, ENSMUST00000128751.2
    Conserved Domains (1) summary
    pfam15188
    Location:1090
    CCDC-167; Coiled-coil domain-containing protein 167

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

    Range
    29695977..29717017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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