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Hoxa6 homeobox A6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685732, updated on 2-Oct-2018

Summary

Official Symbol
Hoxa6provided by RGD
Official Full Name
homeobox A6provided by RGD
Primary source
RGD:1590236
See related
Ensembl:ENSRNOG00000048917
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 53.2), Muscle (RPKM 26.5) and 5 other tissues See more

Genomic context

See Hoxa6 in Genome Data Viewer
Location:
4q24
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (82173478..82183597, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (146840309..146848992, complement)

Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene homeobox A3 Neighboring gene uncharacterized LOC102547399 Neighboring gene homeo box A4 Neighboring gene homeobox protein Hox-A5 Neighboring gene Hoxa cluster antisense RNA 3 Neighboring gene homeobox A7 Neighboring gene homeobox protein Hox-A9

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
anterior/posterior pattern specification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
anterior/posterior pattern specification ISO
Inferred from Sequence Orthology
more info
 
embryonic skeletal system development ISO
Inferred from Sequence Orthology
more info
 
embryonic skeletal system morphogenesis ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191087.1NP_001178016.1  homeobox protein Hox-A6

    See identical proteins and their annotated locations for NP_001178016.1

    Status: PROVISIONAL

    Source sequence(s)
    AABR07073021
    UniProtKB/TrEMBL
    G3V6T4
    Related
    ENSRNOP00000064985.1, ENSRNOT00000074452.1
    Conserved Domains (1) summary
    pfam00046
    Location:159211
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

    Range
    82173478..82183597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017592893.1XP_017448382.1  homeobox protein Hox-A6 isoform X1

    Conserved Domains (1) summary
    pfam00046
    Location:230282
    Homeobox; Homeobox domain
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