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Smim6 small integral membrane protein 6 [ Mus musculus (house mouse) ]

Gene ID: 68528, updated on 17-Nov-2020

Summary

Official Symbol
Smim6provided by MGI
Official Full Name
small integral membrane protein 6provided by MGI
Primary source
MGI:MGI:1915778
See related
Ensembl:ENSMUSG00000075420
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E; Eln; endor; 1110017F19Rik
Expression
Biased expression in colon adult (RPKM 18.4), large intestine adult (RPKM 17.6) and 9 other tissues See more
Orthologs
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Genomic context

See Smim6 in Genome Data Viewer
Location:
11; 11 E2
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (115802843..115804743)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (115912017..115913917)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (115773331..115775231)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene myosin XVB Neighboring gene RecQ protein-like 5 Neighboring gene small integral membrane protein 5 Neighboring gene SAP30 binding protein Neighboring gene predicted gene, 39474 Neighboring gene RIKEN cDNA B230344G16 gene Neighboring gene integrin beta 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane ISM
Inferred from Sequence Model
more info
PubMed 

General protein information

Preferred Names
small integral membrane protein 6
Names
endoregulin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162998.1NP_001156470.1  small integral membrane protein 6

    See identical proteins and their annotated locations for NP_001156470.1

    Status: VALIDATED

    Source sequence(s)
    AK003745
    Consensus CDS
    CCDS56821.1
    UniProtKB/TrEMBL
    Q3U0I6
    Related
    ENSMUSP00000133699.1, ENSMUST00000132961.1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    115802843..115804743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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