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Smim6 small integral membrane protein 6 [ Mus musculus (house mouse) ]

Gene ID: 68528, updated on 31-Jan-2019

Summary

Official Symbol
Smim6provided by MGI
Official Full Name
small integral membrane protein 6provided by MGI
Primary source
MGI:MGI:1915778
See related
Ensembl:ENSMUSG00000075420
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Eln; 1110017F19Rik
Expression
Biased expression in colon adult (RPKM 18.4), large intestine adult (RPKM 17.6) and 9 other tissues See more
Orthologs

Genomic context

See Smim6 in Genome Data Viewer
Location:
11; 11 E2
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (115912017..115913917)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (115773331..115775231)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene myosin XVB Neighboring gene RecQ protein-like 5 Neighboring gene small integral membrane protein 5 Neighboring gene SAP30 binding protein Neighboring gene predicted gene, 39474 Neighboring gene RIKEN cDNA B230344G16 gene Neighboring gene integrin beta 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
small integral membrane protein 6
Names
endoregulin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162998.1NP_001156470.1  small integral membrane protein 6

    See identical proteins and their annotated locations for NP_001156470.1

    Status: VALIDATED

    Source sequence(s)
    AK003745
    Consensus CDS
    CCDS56821.1
    UniProtKB/TrEMBL
    Q3U0I6
    Related
    ENSMUSP00000133699.1, ENSMUST00000132961.1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    115912017..115913917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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