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Tsr3 TSR3 20S rRNA accumulation [ Mus musculus (house mouse) ]

Gene ID: 68327, updated on 23-Mar-2021

Summary

Official Symbol
Tsr3provided by MGI
Official Full Name
TSR3 20S rRNA accumulationprovided by MGI
Primary source
MGI:MGI:1915577
See related
Ensembl:ENSMUSG00000015126
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AL022759; 0610007P22Rik; 1110014B11Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 26.8), CNS E14 (RPKM 18.6) and 28 other tissues See more
Orthologs
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Genomic context

See Tsr3 in Genome Data Viewer
Location:
17; 17 A3.3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (25459120..25461773)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (25240141..25242799)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (25377115..25379744)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene cDNA sequence BC003965 Neighboring gene predicted gene, 52286 Neighboring gene unkempt family like zinc finger Neighboring gene N-acetylglucosamine-1-phosphotransferase, gamma subunit Neighboring gene BAI1-associated protein 3 Neighboring gene microRNA 3547 Neighboring gene ubiquitin-conjugating enzyme E2I Neighboring gene predicted gene, 17801

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Clone Names

  • MGC113771

Gene Ontology Provided by MGI

Function Evidence Code Pubs
transferase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
enzyme-directed rRNA pseudouridine synthesis ISO
Inferred from Sequence Orthology
more info
 
maturation of SSU-rRNA IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
rRNA processing IEA
Inferred from Electronic Annotation
more info
 
ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
18S rRNA aminocarboxypropyltransferase
Names
20S S rRNA accumulation protein 3 homolog
probable ribosome biogenesis protein C16orf42 homolog
ribosome biogenesis protein TSR3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163718.1NP_001157190.1  18S rRNA aminocarboxypropyltransferase isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 3' end of an exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AK158743, BC089019, CA979987
    UniProtKB/Swiss-Prot
    Q5HZH2
    Conserved Domains (3) summary
    PRK02287
    Location:65216
    PRK02287; hypothetical protein; Provisional
    pfam04034
    Location:96212
    DUF367; Domain of unknown function (DUF367)
    pfam04068
    Location:6092
    RLI; Possible Fer4-like domain in RNase L inhibitor, RLI
  2. NM_026676.3NP_080952.2  18S rRNA aminocarboxypropyltransferase isoform 1

    See identical proteins and their annotated locations for NP_080952.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK158743, BC089019
    Consensus CDS
    CCDS28512.1
    UniProtKB/Swiss-Prot
    Q5HZH2
    Related
    ENSMUSP00000068511.6, ENSMUST00000063574.6
    Conserved Domains (3) summary
    PRK02287
    Location:65223
    PRK02287; hypothetical protein; Provisional
    pfam04034
    Location:96219
    DUF367; Domain of unknown function (DUF367)
    pfam04068
    Location:6092
    RLI; Possible Fer4-like domain in RNase L inhibitor, RLI

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    25459120..25461773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006524842.4XP_006524905.1  18S rRNA aminocarboxypropyltransferase isoform X7

    Conserved Domains (1) summary
    pfam04034
    Location:185
    Ribo_biogen_C; Ribosome biogenesis protein, C-terminal
  2. XM_036160763.1XP_036016656.1  18S rRNA aminocarboxypropyltransferase isoform X5

  3. XM_006524840.4XP_006524903.1  18S rRNA aminocarboxypropyltransferase isoform X4

    Conserved Domains (2) summary
    pfam04034
    Location:35160
    Ribo_biogen_C; Ribosome biogenesis protein, C-terminal
    pfam04068
    Location:131
    RLI; Possible Fer4-like domain in RNase L inhibitor, RLI
  4. XM_036160759.1XP_036016652.1  18S rRNA aminocarboxypropyltransferase isoform X1

  5. XM_030250016.2XP_030105876.1  18S rRNA aminocarboxypropyltransferase isoform X6

    Conserved Domains (1) summary
    pfam04034
    Location:12126
    Ribo_biogen_C; Ribosome biogenesis protein, C-terminal
  6. XM_036160760.1XP_036016653.1  18S rRNA aminocarboxypropyltransferase isoform X2

  7. XM_011246586.4XP_011244888.1  18S rRNA aminocarboxypropyltransferase isoform X6

    See identical proteins and their annotated locations for XP_011244888.1

    Conserved Domains (1) summary
    pfam04034
    Location:12126
    Ribo_biogen_C; Ribosome biogenesis protein, C-terminal
  8. XM_036160761.1XP_036016654.1  18S rRNA aminocarboxypropyltransferase isoform X3

  9. XM_036160764.1XP_036016657.1  18S rRNA aminocarboxypropyltransferase isoform X6

    Conserved Domains (1) summary
    pfam04034
    Location:12126
    Ribo_biogen_C; Ribosome biogenesis protein, C-terminal
  10. XM_036160762.1XP_036016655.1  18S rRNA aminocarboxypropyltransferase isoform X3

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