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2310057M21Rik RIKEN cDNA 2310057M21 gene [ Mus musculus (house mouse) ]

Gene ID: 68277, updated on 5-Mar-2024

Summary

Official Symbol
2310057M21Rikprovided by MGI
Official Full Name
RIKEN cDNA 2310057M21 geneprovided by MGI
Primary source
MGI:MGI:1915527
See related
Ensembl:ENSMUSG00000040177 AllianceGenome:MGI:1915527
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
PAAT; 3110040E10Rik
Summary
Enables identical protein binding activity. Predicted to be located in mitochondrion. Is expressed in sensory organ; skeleton; and tarsus. Orthologous to human C10orf88 (chromosome 10 open reading frame 88). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 2.4), CNS E18 (RPKM 2.0) and 28 other tissues See more
Orthologs
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Genomic context

See 2310057M21Rik in Genome Data Viewer
Location:
7 F3; 7 73.88 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (130943340..130964570, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (131340862..131362843, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 24 member B Neighboring gene family with sequence similarity 24, member A Neighboring gene STARR-positive B cell enhancer ABC_E9713 Neighboring gene STARR-positive B cell enhancer ABC_E8214 Neighboring gene STARR-seq mESC enhancer starr_20280 Neighboring gene phosphoseryl-tRNA kinase Neighboring gene STARR-seq mESC enhancer starr_20281 Neighboring gene IKAROS family zinc finger 5 Neighboring gene STARR-positive B cell enhancer ABC_E4981 Neighboring gene acyl-Coenzyme A dehydrogenase, short/branched chain

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP hydrolysis activity ISO
Inferred from Sequence Orthology
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ATPase PAAT
Names
protein associated with ABC transporters
uncharacterized protein C10orf88 homolog
NP_080931.1
XP_011240190.1
XP_030098811.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026655.4NP_080931.1  ATPase PAAT

    See identical proteins and their annotated locations for NP_080931.1

    Status: VALIDATED

    Source sequence(s)
    AK019097, AK148008, BY035992
    Consensus CDS
    CCDS40159.1
    UniProtKB/Swiss-Prot
    Q9D2Q3
    UniProtKB/TrEMBL
    A0A140LJB8
    Related
    ENSMUSP00000050128.10, ENSMUST00000059438.11
    Conserved Domains (1) summary
    pfam14958
    Location:59197
    DUF4506; Domain of unknown function (DUF4506)

RNA

  1. NR_152380.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC156606, AK148008, BC052432, BY035992

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    130943340..130964570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011241888.4XP_011240190.1  ATPase PAAT isoform X1

    See identical proteins and their annotated locations for XP_011240190.1

    UniProtKB/Swiss-Prot
    Q9D2Q3
    UniProtKB/TrEMBL
    A0A140LJB8
    Conserved Domains (1) summary
    pfam14958
    Location:59197
    DUF4506; Domain of unknown function (DUF4506)
  2. XM_030242951.2XP_030098811.1  ATPase PAAT isoform X2