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Rbm28 RNA binding motif protein 28 [ Mus musculus (house mouse) ]

Gene ID: 68272, updated on 23-Jun-2021

Summary

Official Symbol
Rbm28provided by MGI
Official Full Name
RNA binding motif protein 28provided by MGI
Primary source
MGI:MGI:2655711
See related
Ensembl:ENSMUSG00000029701
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI503051; 2810480G15Rik
Expression
Broad expression in CNS E11.5 (RPKM 20.2), CNS E18 (RPKM 15.5) and 24 other tissues See more
Orthologs
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Genomic context

See Rbm28 in Genome Data Viewer
Location:
6; 6 A3.3
Exon count:
19
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (29123572..29164975, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (29123573..29164724, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (29073573..29114724, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene Lep proximal promoter region Neighboring gene leptin Neighboring gene predicted gene, 25589 Neighboring gene proline-rich transmembrane protein 4 Neighboring gene inosine monophosphate dehydrogenase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC12075, MGC38664

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133925.2NP_598686.2  RNA-binding protein 28

    See identical proteins and their annotated locations for NP_598686.2

    Status: VALIDATED

    Source sequence(s)
    AA212598, AK087628, AK161670, AK167050, AW123167
    Consensus CDS
    CCDS51733.1
    UniProtKB/Swiss-Prot
    Q8CGC6
    Related
    ENSMUSP00000007993.10, ENSMUST00000007993.16
    Conserved Domains (5) summary
    cd12413
    Location:581
    RRM1_RBM28_like; RNA recognition motif 1 in RNA-binding protein 28 (RBM28) and similar proteins
    cd12414
    Location:115190
    RRM2_RBM28_like; RNA recognition motif 2 in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:325407
    RRM3_RBM28_like; RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:477571
    RRM4_RBM28_like; RNA recognition motif 4 in RNA-binding protein 28 (RBM28) and similar proteins
    TIGR01661
    Location:6404
    ELAV_HUD_SF; ELAV/HuD family splicing factor

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    29123572..29164975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036152280.1XP_036008173.1  RNA-binding protein 28 isoform X1

    Conserved Domains (3) summary
    TIGR01628
    Location:82330
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12416
    Location:104198
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins
    cl17169
    Location:234
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. XM_030255573.2XP_030111433.1  RNA-binding protein 28 isoform X1

    Conserved Domains (3) summary
    TIGR01628
    Location:82330
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12416
    Location:104198
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins
    cl17169
    Location:234
    RRM_SF; RNA recognition motif (RRM) superfamily

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_026650.1: Suppressed sequence

    Description
    NM_026650.1: This RefSeq was temporarily suppressed because the CDS was partial, and there is not sufficient data to support this transcript.
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