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Urm1 ubiquitin related modifier 1 [ Mus musculus (house mouse) ]

Gene ID: 68205, updated on 5-Mar-2024

Summary

Official Symbol
Urm1provided by MGI
Official Full Name
ubiquitin related modifier 1provided by MGI
Primary source
MGI:MGI:1915455
See related
Ensembl:ENSMUSG00000069020 AllianceGenome:MGI:1915455
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2900073H19Rik
Summary
Predicted to enable protein tag and sulfur carrier activity. Predicted to be involved in protein urmylation; tRNA thio-modification; and tRNA wobble uridine modification. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in mandible; nervous system; and neural retina. Orthologous to human URM1 (ubiquitin related modifier 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in limb E14.5 (RPKM 14.2), cerebellum adult (RPKM 13.3) and 28 other tissues See more
Orthologs
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Genomic context

Location:
2 B; 2 20.67 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (29717401..29735008)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (29827389..29844996)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 52595 Neighboring gene solute carrier family 27 (fatty acid transporter), member 4 Neighboring gene STARR-seq mESC enhancer starr_04075 Neighboring gene STARR-positive B cell enhancer ABC_E224 Neighboring gene microRNA 219a-2 Neighboring gene predicted gene, 54109 Neighboring gene microRNA 219b Neighboring gene cerebral endothelial cell adhesion molecule Neighboring gene RIKEN cDNA 2600006K01 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:29724576-29724685

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein tag activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables sulfur carrier activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in protein urmylation IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within tRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in tRNA thio-modification ISO
Inferred from Sequence Orthology
more info
 
involved_in tRNA wobble uridine modification ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
ubiquitin-related modifier 1
Names
ubiquitin-related modifier 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026615.4NP_080891.1  ubiquitin-related modifier 1

    See identical proteins and their annotated locations for NP_080891.1

    Status: PROVISIONAL

    Source sequence(s)
    AL928926
    Consensus CDS
    CCDS15859.1
    UniProtKB/Swiss-Prot
    A3KGW2, Q8BHY9, Q9D2P4
    Related
    ENSMUSP00000088676.4, ENSMUST00000091142.4
    Conserved Domains (1) summary
    pfam09138
    Location:6101
    Urm1; Urm1 (Ubiquitin related modifier)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    29717401..29735008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)