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Dubr Dppa2 upstream binding RNA [ Mus musculus (house mouse) ]

Gene ID: 68190, updated on 28-Oct-2024

Summary

Official Symbol
Dubrprovided by MGI
Official Full Name
Dppa2 upstream binding RNAprovided by MGI
Primary source
MGI:MGI:1915440
See related
AllianceGenome:MGI:1915440
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dum; 5330426P16Rik
Summary
Acts upstream of or within several processes, including generation of neurons; negative regulation of macromolecule biosynthetic process; and protein stabilization. Is active in cytoplasm and nucleus. Is expressed in central nervous system and dorsal root ganglion. Orthologous to human DUBR (DPPA2 upstream binding RNA). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in lung adult (RPKM 5.1), genital fat pad adult (RPKM 3.3) and 24 other tissues See more
Orthologs
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Genomic context

See Dubr in Genome Data Viewer
Location:
16 B5; 16 31.5 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (50547114..50553136, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (50726751..50732773, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930542D17 gene Neighboring gene coiled-coil domain containing 54 Neighboring gene protease (prosome, macropain) 26S subunit, ATPase 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_40994 Neighboring gene STARR-positive B cell enhancer ABC_E7457 Neighboring gene STARR-positive B cell enhancer ABC_E1491 Neighboring gene microRNA 6363 Neighboring gene STARR-seq mESC enhancer starr_40996 Neighboring gene RIKEN cDNA 1700116B05 gene Neighboring gene predicted gene, 24925

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Other Names

  • developmental pluripotency-associated 2 upstream binding muscle lncRNA

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein-containing complex binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028300.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK045752, AK137010, CJ061177

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    50547114..50553136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)