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Rbmxl1 RNA binding motif protein, X-linked-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 680944, updated on 2-Oct-2018

Summary

Official Symbol
Rbmxl1provided by RGD
Official Full Name
RNA binding motif protein, X-linked-like 1provided by RGD
Primary source
RGD:1585845
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Rbmxrt
Expression
Biased expression in Thymus (RPKM 148.9), Spleen (RPKM 119.4) and 9 other tissues See more

Genomic context

See Rbmxl1 in Genome Data Viewer
Location:
4q21
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (42186612..42188294, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (41774114..41775810, complement)

Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene forkhead box P2 Neighboring gene uncharacterized LOC102555999 Neighboring gene MyoD family inhibitor domain containing Neighboring gene cystic fibrosis transmembrane conductance regulator

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
positive regulation of mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
RNA binding motif protein, X-linked-like-1
Names
RNA binding motif protein, X chromosome retrogene
heterogeneous nuclear ribonucleoprotein G-like 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

    Range
    42186612..42188294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003749703.3XP_003749751.1  RNA binding motif protein, X-linked-like-1

    Conserved Domains (3) summary
    COG0724
    Location:985
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12382
    Location:786
    RRM_RBMX_like; RNA recognition motif in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins
    pfam08081
    Location:170214
    RBM1CTR; RBM1CTR (NUC064) family

Alternate Rn_Celera

Genomic

  1. AC_000072.1 Alternate Rn_Celera

    Range
    39279350..39281031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002726358.5XP_002726404.1  RNA binding motif protein, X-linked-like-1

    Conserved Domains (3) summary
    COG0724
    Location:985
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12382
    Location:786
    RRM_RBMX_like; RNA recognition motif in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins
    pfam08081
    Location:165209
    RBM1CTR; RBM1CTR (NUC064) family
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