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Rbm42 RNA binding motif protein 42 [ Mus musculus (house mouse) ]

Gene ID: 68035, updated on 5-Jan-2023


Official Symbol
Rbm42provided by MGI
Official Full Name
RNA binding motif protein 42provided by MGI
Primary source
See related
Ensembl:ENSMUSG00000036733 AllianceGenome:MGI:1915285
Gene type
protein coding
RefSeq status
Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700003D06Rik; 3100004P22Rik
Predicted to enable RNA binding activity. Acts upstream of or within negative regulation of mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including genitourinary system; heart; liver; lung; and spleen. Orthologous to human RBM42 (RNA binding motif protein 42). [provided by Alliance of Genome Resources, Apr 2022]
Ubiquitous expression in adrenal adult (RPKM 61.3), ovary adult (RPKM 42.7) and 28 other tissues See more
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Genomic context

See Rbm42 in Genome Data Viewer
7; 7 B1
Exon count:
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (30340420..30349653, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (30640995..30650228, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase, subunit 6B1 Neighboring gene ets variant 2 Neighboring gene HAUS augmin-like complex, subunit 5 Neighboring gene PMIS2 transmembrane protein

Genomic regions, transcripts, and products


  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Potential readthrough

Included gene: Haus5


Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex ISO
Inferred from Sequence Orthology
more info
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
located_in nucleus IEA
Inferred from Electronic Annotation
more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133693.2NP_598454.2  RNA-binding protein 42

    Status: VALIDATED

    Source sequence(s)
    AK013929, AK151000, BY350471, BY551742
    Consensus CDS
    Q3UBE0, Q91V81
    A0A6P5PYJ5, A0A8C6GKH2
    ENSMUSP00000040005.7, ENSMUST00000042726.14
    Conserved Domains (1) summary
    RRM_RBM42; RNA recognition motif (RRM) found in RNA-binding protein 42 (RBM42) and similar proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J


  1. NC_000073.7 Reference GRCm39 C57BL/6J

    30340420..30349653 complement
    GenBank, FASTA, Sequence Viewer (Graphics)