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Rpl22l1 ribosomal protein L22 like 1 [ Mus musculus (house mouse) ]

Gene ID: 68028, updated on 26-Sep-2022

Summary

Official Symbol
Rpl22l1provided by MGI
Official Full Name
ribosomal protein L22 like 1provided by MGI
Primary source
MGI:MGI:1915278
See related
Ensembl:ENSMUSG00000039221 AllianceGenome:MGI:1915278
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3110001N18Rik
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in cytosol. Orthologous to human RPL22L1 (ribosomal protein L22 like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in liver E14 (RPKM 86.2), placenta adult (RPKM 77.4) and 12 other tissues See more
Orthologs
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Genomic context

See Rpl22l1 in Genome Data Viewer
Location:
3; 3 A3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (28859657..28861573)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (28805508..28807424)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700112D23 gene Neighboring gene predicted pseudogene 6505 Neighboring gene eukaryotic translation initiation factor 5A2 Neighboring gene predicted gene, 32950 Neighboring gene predicted gene, 33051 Neighboring gene predicted gene, 33102 Neighboring gene predicted gene 1527

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
60S ribosomal protein L22-like 1
NP_001334155.1
NP_080793.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347226.3NP_001334155.1  60S ribosomal protein L22-like 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC122490
    Consensus CDS
    CCDS84615.1
    UniProtKB/Swiss-Prot
    Q9D7S7
    UniProtKB/TrEMBL
    A0A6P5PK78
    Related
    ENSMUSP00000141510.2, ENSMUST00000194649.2
    Conserved Domains (1) summary
    pfam01776
    Location:15112
    Ribosomal_L22e; Ribosomal L22e protein family
  2. NM_026517.4NP_080793.1  60S ribosomal protein L22-like 1 isoform 1

    See identical proteins and their annotated locations for NP_080793.1

    Status: VALIDATED

    Source sequence(s)
    AC122490
    Consensus CDS
    CCDS17278.1
    UniProtKB/Swiss-Prot
    Q9CXU8, Q9D7S7
    UniProtKB/TrEMBL
    A0A6P5P9L9, A0A8C6HTZ6, Q0VBA4
    Related
    ENSMUSP00000043111.6, ENSMUST00000043867.11
    Conserved Domains (1) summary
    pfam01776
    Location:16113
    Ribosomal_L22e; Ribosomal L22e protein family

RNA

  1. NR_154888.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122490
    Related
    ENSMUST00000193168.2
  2. NR_154889.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122490

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    28859657..28861573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)