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Sdhaf4 succinate dehydrogenase complex assembly factor 4 [ Mus musculus (house mouse) ]

Gene ID: 68002, updated on 31-Jan-2019

Summary

Official Symbol
Sdhaf4provided by MGI
Official Full Name
succinate dehydrogenase complex assembly factor 4provided by MGI
Primary source
MGI:MGI:1915252
See related
Ensembl:ENSMUSG00000026154
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C6orf57; 1110058L19Rik; 1700001E18Rik
Expression
Ubiquitous expression in CNS E14 (RPKM 16.2), bladder adult (RPKM 13.6) and 23 other tissues See more
Orthologs

Genomic context

See Sdhaf4 in Genome Data Viewer
Location:
1; 1 A5
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (23995939..24005640, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (24002778..24012479, complement)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene 28822 Neighboring gene beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) Neighboring gene small ArfGAP 1 Neighboring gene predicted gene, 26524 Neighboring gene family with sequence similarity 135, member A Neighboring gene predicted gene, 30756 Neighboring gene collagen, type IX, alpha 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
succinate dehydrogenase (ubiquinone) activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
cellular respiration IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular respiration ISO
Inferred from Sequence Orthology
more info
 
innate immune response IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitochondrial respiratory chain complex II assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial respiratory chain complex II assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitochondrial respiratory chain complex II assembly ISO
Inferred from Sequence Orthology
more info
 
neural retina development ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
mitochondrion HDA PubMed 

General protein information

Preferred Names
succinate dehydrogenase assembly factor 4, mitochondrial
Names
SDH assembly factor 4
UPF0369 protein C6orf57 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026503.3NP_080779.2  succinate dehydrogenase assembly factor 4, mitochondrial precursor

    See identical proteins and their annotated locations for NP_080779.2

    Status: VALIDATED

    Source sequence(s)
    AK015824, BC028981, BF147474
    Consensus CDS
    CCDS14852.1
    UniProtKB/Swiss-Prot
    Q8BTE0
    Related
    ENSMUSP00000027338.3, ENSMUST00000027338.3
    Conserved Domains (1) summary
    pfam07896
    Location:62104
    DUF1674; Protein of unknown function (DUF1674)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

    Range
    23995939..24005640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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