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Ccny cyclin Y [ Mus musculus (house mouse) ]

Gene ID: 67974, updated on 19-Mar-2019

Summary

Official Symbol
Ccnyprovided by MGI
Official Full Name
cyclin Yprovided by MGI
Primary source
MGI:MGI:1915224
See related
Ensembl:ENSMUSG00000024286
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700025H17Rik; 3110050L10Rik; 4631402G10Rik; 5730405I09Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 25.9), ovary adult (RPKM 20.4) and 28 other tissues See more
Orthologs

Genomic context

See Ccny in Genome Data Viewer
Location:
18; 18 A1
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (9314044..9450150, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (9314042..9450148, complement)

Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 8 Neighboring gene gap junction protein, delta 4 Neighboring gene predicted gene, 35458 Neighboring gene family with sequence similarity 76, member A pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
cyclin-dependent protein serine/threonine kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cyclin-dependent protein serine/threonine kinase regulator activity ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
G2/M transition of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
cell cycle IEA
Inferred from Electronic Annotation
more info
 
cell division IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cyclin-dependent protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of cyclin-dependent protein serine/threonine kinase activity ISO
Inferred from Sequence Orthology
more info
 
regulation of canonical Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasmic cyclin-dependent protein kinase holoenzyme complex ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cyclin-Y
Names
cyclin fold protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026484.4NP_080760.2  cyclin-Y

    See identical proteins and their annotated locations for NP_080760.2

    Status: VALIDATED

    Source sequence(s)
    AC108777, AK014201, AK014507, AK028696, AW048376
    Consensus CDS
    CCDS29050.1
    UniProtKB/Swiss-Prot
    Q8BGU5
    Related
    ENSMUSP00000050001.4, ENSMUST00000053917.5
    Conserved Domains (1) summary
    pfam00134
    Location:143265
    Cyclin_N; Cyclin, N-terminal domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

    Range
    9314044..9450150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317974.1XP_017173463.1  cyclin-Y isoform X1

  2. XM_017317975.1XP_017173464.1  cyclin-Y isoform X2

  3. XM_017317976.1XP_017173465.1  cyclin-Y isoform X3

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