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Zcchc10 zinc finger, CCHC domain containing 10 [ Mus musculus (house mouse) ]

Gene ID: 67966, updated on 5-Mar-2024

Summary

Official Symbol
Zcchc10provided by MGI
Official Full Name
zinc finger, CCHC domain containing 10provided by MGI
Primary source
MGI:MGI:1196228
See related
Ensembl:ENSMUSG00000018239 AllianceGenome:MGI:1196228
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D11Ertd416e; 2410141K03Rik
Summary
Predicted to enable nucleic acid binding activity and zinc ion binding activity. Is expressed in central nervous system; early embryo; and sensory organ. Orthologous to human ZCCHC10 (zinc finger CCHC-type containing 10). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 5.3), liver E14 (RPKM 5.0) and 28 other tissues See more
Orthologs
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Genomic context

See Zcchc10 in Genome Data Viewer
Location:
11 B1.3; 11 31.92 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (53215516..53224128)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (53324689..53333301)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_29476 Neighboring gene heat shock protein 4 Neighboring gene STARR-positive B cell enhancer ABC_E2987 Neighboring gene predicted gene, 30525 Neighboring gene STARR-seq mESC enhancer starr_29480 Neighboring gene AF4/FMR2 family, member 4 Neighboring gene predicted gene, 32048 Neighboring gene predicted gene, 25930

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
zinc finger CCHC domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026479.4NP_080755.2  zinc finger CCHC domain-containing protein 10

    See identical proteins and their annotated locations for NP_080755.2

    Status: PROVISIONAL

    Source sequence(s)
    AL592489
    Consensus CDS
    CCDS24675.1
    UniProtKB/Swiss-Prot
    Q9CX48
    Related
    ENSMUSP00000018383.4, ENSMUST00000018383.10
    Conserved Domains (1) summary
    pfam13917
    Location:1756
    zf-CCHC_3; Zinc knuckle

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    53215516..53224128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)