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1700096J18Rik RIKEN cDNA 1700096J18 gene [ Mus musculus (house mouse) ]

Gene ID: 67927, updated on 8-Feb-2024

Summary

Official Symbol
1700096J18Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700096J18 geneprovided by MGI
Primary source
MGI:MGI:1915177
See related
Ensembl:ENSMUSG00000099630 AllianceGenome:MGI:1915177
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 4.2) and colon adult (RPKM 0.3) See more
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Genomic context

See 1700096J18Rik in Genome Data Viewer
Location:
11 E1; 11 71.88 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (109237693..109244477)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (109346867..109353651)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_31015 Neighboring gene predicted gene, 39441 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:109173531-109173684 Neighboring gene STARR-positive B cell enhancer ABC_E2374 Neighboring gene STARR-seq mESC enhancer starr_31016 Neighboring gene RIKEN cDNA 1600015H23 gene Neighboring gene STARR-seq mESC enhancer starr_31020 Neighboring gene STARR-positive B cell enhancer ABC_E7086 Neighboring gene predicted gene 11696 Neighboring gene STARR-positive B cell enhancer ABC_E5291 Neighboring gene guanine nucleotide binding protein, alpha 13 Neighboring gene STARR-positive B cell enhancer ABC_E4009 Neighboring gene STARR-positive B cell enhancer ABC_E7087 Neighboring gene STARR-positive B cell enhancer mm9_chr11:109281499-109281800 Neighboring gene STARR-positive B cell enhancer ABC_E380 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:109287298-109287521 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:109293875-109294028 Neighboring gene archaelysin family metallopeptidase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027883.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK006164, AK007092
    Related
    ENSMUST00000190043.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    109237693..109244477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)