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Rnls renalase, FAD-dependent amine oxidase [ Mus musculus (house mouse) ]

Gene ID: 67795, updated on 26-Sep-2022

Summary

Official Symbol
Rnlsprovided by MGI
Official Full Name
renalase, FAD-dependent amine oxidaseprovided by MGI
Primary source
MGI:MGI:1915045
See related
Ensembl:ENSMUSG00000071573 AllianceGenome:MGI:1915045
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C10orf59; 6530404N21Rik
Summary
Predicted to enable oxidoreductase activity, acting on NAD(P)H. Predicted to be active in extracellular region. Human ortholog(s) of this gene implicated in essential hypertension and hypertension. Orthologous to human RNLS (renalase, FAD dependent amine oxidase). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
Expression
Biased expression in testis adult (RPKM 47.5), adrenal adult (RPKM 5.9) and 7 other tissues See more
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Genomic context

See Rnls in Genome Data Viewer
Location:
19; 19 C1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (33115140..33369695, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (33137740..33392295, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 29863 Neighboring gene predicted gene, 29946 Neighboring gene microRNA 3970 Neighboring gene U2 spliceosomal RNA Neighboring gene cullin 1 pseudogene Neighboring gene predicted gene, 29998 Neighboring gene predicted gene 7237 Neighboring gene 39S ribosomal protein L33, mitochondrial pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3)  1 citation
  • Endonuclease-mediated (3) 

General gene information

Markers

Homology

  • Homologs of the Rnls gene: The Rnls gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, chicken, zebrafish, and frog.

General protein information

Preferred Names
renalase
Names
MAO-C
alpha-NAD(P)H oxidase/anomerase
monoamine oxidase-C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368833.1NP_001355762.1  renalase precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1, coding) represents the functional allele present in Kunming and other strains.
    Source sequence(s)
    AC125381, AC160088, DQ788834
    Conserved Domains (1) summary
    COG3380
    Location:1342
    COG3380; Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

RNA

  1. NR_160911.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This transcript (1, non-coding) represents the non-coding allele present in the reference strain.
    Source sequence(s)
    AC117183, AC125381, AC160088
    Related
    ENSMUST00000096114.13

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    33115140..33369695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001146342.2: Suppressed sequence

    Description
    NM_001146342.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  2. NM_181587.2: Suppressed sequence

    Description
    NM_181587.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.