U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCARNA22 small Cajal body-specific RNA 22 [ Homo sapiens (human) ]

Gene ID: 677770, updated on 2-Nov-2024

Summary

Official Symbol
SCARNA22provided by HGNC
Official Full Name
small Cajal body-specific RNA 22provided by HGNC
Primary source
HGNC:HGNC:32580
See related
Ensembl:ENSG00000249784 AllianceGenome:HGNC:32580
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ACA11
Summary
Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SCARNA22 in Genome Data Viewer
Location:
4p16.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (1974636..1974760)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (1973145..1973269)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (1976363..1976487)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:1828066-1828868 Neighboring gene leucine zipper and EF-hand containing transmembrane protein 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:1844335-1844585 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:1856349-1856525 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:1857091-1857592 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21161 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15148 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:1858969-1859764 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:1872049-1872550 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15150 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15151 Neighboring gene RNA, 7SL, cytoplasmic 671, pseudogene Neighboring gene nuclear receptor binding SET domain protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21162 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:1993535-1994374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:1999747-2000246 Neighboring gene negative elongation factor complex member A Neighboring gene microRNA 943 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:2010384-2010884 Neighboring gene uncharacterized LOC124900839 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:2042861-2043362 Neighboring gene NELL2 interacting cell ontogeny regulator 1

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • ACA11 snoRNA

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003004.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AJ609470
    Related
    ENST00000503991.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    1974636..1974760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    1973145..1973269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)