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SCARNA13 small Cajal body-specific RNA 13 [ Homo sapiens (human) ]

Gene ID: 677768, updated on 20-Nov-2022

Summary

Official Symbol
SCARNA13provided by HGNC
Official Full Name
small Cajal body-specific RNA 13provided by HGNC
Primary source
HGNC:HGNC:32570
See related
Ensembl:ENSG00000252481 AllianceGenome:HGNC:32570
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U93
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Genomic context

See SCARNA13 in Genome Data Viewer
Location:
14q32.13
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (95533355..95533629, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (89764048..89764322, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (95999692..95999966, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 6741 Neighboring gene CRISPRi-validated cis-regulatory element chr14.2067 Neighboring gene small nucleolar RNA host gene 10 Neighboring gene glutaredoxin 5 Neighboring gene CRISPRi-validated cis-regulatory element chr14.2077

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Cajal body IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003002.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF492209
    Related
    ENST00000516672.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    95533355..95533629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    89764048..89764322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)